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| -rwxr-xr-x | scripts/make_infojson.sh | 191 |
1 files changed, 0 insertions, 191 deletions
diff --git a/scripts/make_infojson.sh b/scripts/make_infojson.sh deleted file mode 100755 index 85706c0..0000000 --- a/scripts/make_infojson.sh +++ /dev/null @@ -1,191 +0,0 @@ -#!/bin/sh -# -# This script is used to make a bare '_INFO.json' file -# placed under directory 'repro/', -# thus scripts 'ciao_calc_ct.sh' and 'ciao_calc_csb.sh' -# can get required information from this file. -# -# Run this script in directory 'repro/'. -# -# Weitian LI <liweitianux@gmail.com> -# 2014/06/24 -# -# -VERSION="v2.0" -UPDATED="2015/06/03" -# -# ChangeLog: -# v2.0, 2015/06/03, Aaron LI -# * Copy needed pfiles to tmp directory, -# set environment variable $PFILES to use these first. -# and remove them after usage. -# v1.1, 2014/12/05, Weitian LI -# regex '\s+' not supported by old grep version, change to use '[[:space:]]+' -# - -## usage, help {{{ -case "$1" in - -[hH]*|--[hH]*) - printf "usage:\n" - printf " `basename $0` evtdir=<evt_dir> spcdir=<spc_dir> imgdir=<img_dir> massdir=<mass_dir> json=<info_json>\n" - printf "\nNOTE:\n" - printf " run this script in dir 'repro/'\n" - printf "\nversion:\n" - printf " ${VERSION}, ${UPDATED}\n" - exit 1 - ;; -esac -## usage, help }}} - -## default parameters {{{ -# basedir: . (run this script under basedir) -BASEDIR=`pwd -P` -# -## directory structure of wjy's data -# default evtdir relative to 'basedir' -DFT_EVTDIR="../evt2/evt" -# default spcdir relative to 'basedir' -DFT_SPCDIR="../evt2/spc/profile" -# default imgdir relative to 'basedir' -DFT_IMGDIR="../evt2/img" -# default massdir relative to 'basedir' -DFT_MASSDIR="../evt2/mass" -## }}} - -## functions {{{ -# process commandline arguments -# cmdline arg format: `KEY=VALUE' -getopt_keyval() { - until [ -z "$1" ] - do - key=${1%%=*} # extract key - val=${1#*=} # extract value - keyval="${key}=\"${val}\"" - echo "## getopt: eval '${keyval}'" - eval ${keyval} - shift # shift, process next one - done -} -## functions }}} - -## parameters {{{ -# process cmdline args using `getopt_keyval' -getopt_keyval "$@" - -# evt dir -if [ ! -z "${evtdir}" ] && [ -d "${BASEDIR}/${evtdir}" ]; then - EVT_DIR=`( cd ${BASEDIR}/${evtdir} && pwd -P )` -elif [ -d "${BASEDIR}/${DFT_EVTDIR}" ]; then - EVT_DIR=`( cd ${BASEDIR}/${DFT_EVTDIR} && pwd -P )` -else - read -p "> evt dir (relative to basedir): " EVT_DIR - if [ ! -d "${BASEDIR}/${EVT_DIR}" ]; then - printf "ERROR: given \`${EVT_DIR}' invalid\n" - exit 20 - else - EVT_DIR="${BASEDIR}/${EVT_DIR}" - fi -fi -printf "## use evtdir: \`${EVT_DIR}'\n" - -# spc dir -if [ ! -z "${spcdir}" ] && [ -d "${BASEDIR}/${spcdir}" ]; then - SPC_DIR=`( cd ${BASEDIR}/${spcdir} && pwd -P )` -elif [ -d "${BASEDIR}/${DFT_SPCDIR}" ]; then - SPC_DIR=`( cd ${BASEDIR}/${DFT_SPCDIR} && pwd -P )` -else - read -p "> spc dir (relative to basedir): " SPC_DIR - if [ ! -d "${BASEDIR}/${SPC_DIR}" ]; then - printf "ERROR: given \`${SPC_DIR}' invalid\n" - exit 21 - else - SPC_DIR="${BASEDIR}/${SPC_DIR}" - fi -fi -printf "## use spcdir: \`${SPC_DIR}'\n" - -# img dir -if [ ! -z "${imgdir}" ] && [ -d "${BASEDIR}/${imgdir}" ]; then - IMG_DIR=`( cd ${BASEDIR}/${imgdir} && pwd -P )` -elif [ -d "${BASEDIR}/${DFT_IMGDIR}" ]; then - IMG_DIR=`( cd ${BASEDIR}/${DFT_IMGDIR} && pwd -P )` -else - read -p "> img dir (relative to basedir): " IMG_DIR - if [ ! -d "${BASEDIR}/${IMG_DIR}" ]; then - printf "ERROR: given \`${IMG_DIR}' invalid\n" - exit 22 - else - IMG_DIR="${BASEDIR}/${IMG_DIR}" - fi -fi -printf "## use imgdir: \`${IMG_DIR}'\n" - -# mass dir -if [ ! -z "${massdir}" ] && [ -d "${BASEDIR}/${massdir}" ]; then - MASS_DIR=`( cd ${BASEDIR}/${massdir} && pwd -P )` -elif [ -d "${BASEDIR}/${DFT_MASSDIR}" ]; then - MASS_DIR=`( cd ${BASEDIR}/${DFT_MASSDIR} && pwd -P )` -else - read -p "> mass dir (relative to basedir): " MASS_DIR - if [ ! -d "${BASEDIR}/${MASS_DIR}" ]; then - printf "ERROR: given \`${MASS_DIR}' invalid\n" - exit 22 - else - MASS_DIR="${BASEDIR}/${MASS_DIR}" - fi -fi -printf "## use massdir: \`${MASS_DIR}'\n" -## }}} - -## prepare parameter files (pfiles) {{{ -CIAO_TOOLS="dmkeypar" - -PFILES_TMPDIR="/tmp/pfiles-$$" -[ -d "${PFILES_TMPDIR}" ] && rm -rf ${PFILES_TMPDIR} || mkdir ${PFILES_TMPDIR} - -# Copy necessary pfiles for localized usage -for tool in ${CIAO_TOOLS}; do - pfile=`paccess ${tool}` - punlearn ${tool} && cp -Lvf ${pfile} ${PFILES_TMPDIR}/ -done - -# Modify environment variable 'PFILES' to use local pfiles first -export PFILES="${PFILES_TMPDIR}:${PFILES}" -## pfiles }}} - -# set files -EVT2_CLEAN=`readlink -f ${EVT_DIR}/evt2*_clean*.fits | head -n 1` -MASS_SBP_CFG=`readlink -f ${MASS_DIR}/source.cfg` -MASS_RES=`readlink -f ${MASS_DIR}/final_result*.txt` -SPC_CFG=`readlink -f ${IMG_DIR}/spc_fit.cfg` - -# get needed data -punlearn dmkeypar -OBSID=`dmkeypar "${EVT2_CLEAN}" OBS_ID echo=yes` -NAME=`dmkeypar "${EVT2_CLEAN}" OBJECT echo=yes` -Z=`grep -E '^z[[:space:]]+' ${MASS_SBP_CFG} | awk '{ print $2 }'` -NH=`grep -E '^nh[[:space:]]+' ${SPC_CFG} | awk '{ print $2 }'` -R500=`grep -E '^r500=' ${MASS_RES} | awk '{ print $2 }'` - -# generate info json file -if [ ! -z "${json}" ]; then - JSON_FILE="${json}" -else - JSON_FILE="oi${OBSID}_INFO.json" -fi -printf "## info json_filename: \`${JSON_FILE}'\n" - -cat > ${JSON_FILE} << _EOF_ -{ - "Obs. ID": ${OBSID}, - "Source Name": "${NAME}", - "nH (10^22 cm^-2)": ${NH}, - "redshift": ${Z}, - "R500 (kpc)": ${R500}, - "Comment": "Bare info json file created by `basename $0`" -}, -_EOF_ - -# clean pfiles -rm -rf ${PFILES_TMPDIR} - |