From 3837730653935a9475bf8318dd6710effa3c959c Mon Sep 17 00:00:00 2001 From: Aaron LI Date: Tue, 7 Feb 2017 22:18:42 +0800 Subject: Rename fit_nfwmass.sh to fit_mass; Update to the new style config --- mass_profile/fit_nfwmass.sh | 313 -------------------------------------------- 1 file changed, 313 deletions(-) delete mode 100755 mass_profile/fit_nfwmass.sh (limited to 'mass_profile/fit_nfwmass.sh') diff --git a/mass_profile/fit_nfwmass.sh b/mass_profile/fit_nfwmass.sh deleted file mode 100755 index c6e8b8c..0000000 --- a/mass_profile/fit_nfwmass.sh +++ /dev/null @@ -1,313 +0,0 @@ -#!/bin/sh -# -# Front-end script used to calculate the mass and related values. -# -# Output: -# * final_result.txt / center_only_results.txt -# * beta_param_center.txt / dbeta_param_center.txt -# * gas_mass_int_center.qdp -# * mass_int_center.qdp -# * nfw_fit_center.qdp -# * nfw_param_center.txt -# * overdensity_center.qdp -# * rho_fit_center.dat -# * rho_fit_center.qdp -# * sbp_fit_center.qdp -# * entropy_center.qdp -# * ${t_profile_type}_param_center.txt -# * ${t_profile_type}_dump_center.qdp -# * ${t_profile_type}_fit_center.qdp -# * summary_mass_profile.qdp -# * summary_overdensity.qdp -# * summary_gas_mass_profile.qdp -# * summary_entropy.qdp -# -# Junhua Gu -# Weitian LI -# 2016-06-07 -# - -if [ $# -eq 1 ] || [ $# -eq 2 ]; then - : -else - echo "usage:" - echo " `basename $0` [c]" - echo "" - echo "arguments:" - echo " : main config file used for mass calculation" - echo " [c]: optional; if specified, do not calculate the errors" - exit 1 -fi - -if ! which xspec > /dev/null; then - printf "*** ERROR: please initialize HEASOFT first\n" - exit 2 -fi - -if [ -z "${HEADAS}" ]; then - printf "*** ERROR: variable \`HEADAS' not properly set\n" - exit 3 -fi - -export PATH="/usr/local/bin:/usr/bin:/bin:$PATH" -export PGPLOT_FONT="${HEADAS}/lib/grfont.dat" -printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n" - -base_path=$(dirname $(realpath $0)) -printf "## base_path: \`${base_path}'\n" -cfg_file="$1" -printf "## use configuration file: \`${cfg_file}'\n" -case "$2" in - [cC]) - F_C="YES" - ;; - *) - F_C="NO" - ;; -esac - -# rmin for fit_nfw_mass -nfw_rmin_kpc=`grep '^nfw_rmin_kpc' ${cfg_file} | awk '{ print $2 }'` -# profile type name -t_profile_type=`grep '^t_profile' ${cfg_file} | awk '{ print $2 }'` -printf "## t_profile_type: \`$t_profile_type'\n" -# data file name -t_data_file=`grep '^t_data_file' ${cfg_file} | awk '{ print $2 }'` -t_param_file=`grep '^t_param_file' ${cfg_file} | awk '{ print $2 }'` -# sbp config file -sbp_cfg=`grep '^sbp_cfg' ${cfg_file} | awk '{ print $2 }'` -# temperature profile file -T_file=`grep '^T_file' ${sbp_cfg} | awk '{ print $2 }'` -cfunc_file=`grep '^cfunc_file' ${sbp_cfg} | awk '{ print $2 }'` -abund=`grep '^abund' ${cfg_file} | awk '{ print $2 }'` -nh=`grep '^nh' ${cfg_file} | awk '{ print $2 }'` -## calc `cm_per_pixel' instead {{{ -z=`grep '^z' ${sbp_cfg} | awk '{ print $2 }'` -cm_per_pixel=`cosmo_calc ${z} | grep 'cm/pixel' | awk -F':' '{ print $2 }'` -sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel ${cm_per_pixel}/" ${sbp_cfg} -printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n" -## cm_per_pixel }}} -da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"` -dl=`python -c "print($da*(1+$z)**2)"` -printf "da= ${da}\n" -printf "dl= ${dl}\n" -## sbp {{{ -sbp_data_file=`grep '^sbp_file' ${sbp_cfg} | awk '{ print $2 }'` -radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{ print $2 }'` - -if [ "x${radius_sbp_file}" = "x" ]; then - printf "*** ERROR: radius_sbp_file not found\n" - exit 200 -fi - -TMP_RSBP="_tmp_rsbp.txt" -[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP} -cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP} -# mv -f _tmp_rsbp.txt ${radius_sbp_file} -radius_sbp_file="${TMP_RSBP}" -## sbp }}} - -## sbp model: beta/dbeta {{{ -if grep -q '^beta2' $sbp_cfg; then - MODEL="dbeta" - MODEL_NAME="double-beta" -else - MODEL="beta" - MODEL_NAME="single-beta" -fi -# }}} - -# only 'wang2012' model supported {{{ -if [ "X${t_profile_type}" != "Xwang2012" ]; then - printf "ERROR: invalid temperature profile model: \`${t_profile_type}'!\n" - exit 10 -fi -T_param_center="${t_profile_type}_param_center.txt" -T_fit_center="${t_profile_type}_fit_center.qdp" -T_file_center="${t_profile_type}_dump_center.qdp" -T_dump="${t_profile_type}_dump.qdp" -PROG_TPROFILE="fit_${t_profile_type}_model" -${base_path}/${PROG_TPROFILE} ${t_data_file} ${t_param_file} \ - ${cm_per_pixel} 2> /dev/null | tee ${T_param_center} -cp -fv ${T_dump} ${T_file} -mv -fv ${T_dump} ${T_file_center} -mv -fv fit_result.qdp ${T_file_center} -# temp profile }}} - -$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file cfunc_bolo.dat -cfunc_file_center="coolfunc_data_center.txt" -cp -f ${cfunc_file} ${cfunc_file_center} -mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt - -PROG_SBPFIT="fit_${MODEL}_sbp" -RES_SBPFIT="${MODEL}_param.txt" -RES_SBPFIT_CENTER="${MODEL}_param_center.txt" -${base_path}/${PROG_SBPFIT} ${sbp_cfg} 2> /dev/null -mv -fv ${RES_SBPFIT} ${RES_SBPFIT_CENTER} -cat ${RES_SBPFIT_CENTER} -mv -fv sbp_fit.qdp sbp_fit_center.qdp -mv -fv rho_fit.qdp rho_fit_center.qdp -mv -fv rho_fit.dat rho_fit_center.dat -mv -fv entropy.qdp entropy_center.qdp -${base_path}/fit_nfw_mass mass_int.dat $z $nfw_rmin_kpc 2> /dev/null -mv -fv nfw_param.txt nfw_param_center.txt -mv -fv nfw_fit_result.qdp nfw_fit_center.qdp -mv -fv nfw_dump.qdp mass_int_center.qdp -mv -fv overdensity.qdp overdensity_center.qdp -mv -fv gas_mass_int.qdp gas_mass_int_center.qdp - -#exit 233 - -## cooling time (-> use 'ciao_calc_ct.sh') -$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat -## radius to calculate tcool, not the cooling time! -rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F'=' '{ print .048*$2 }'` -printf "rcool= ${rcool}\n" - -## only calculate central value {{{ -if [ "${F_C}" = "YES" ]; then - RES_CENTER="center_only_results.txt" - [ -e "${RES_CENTER}" ] && mv -f ${RES_CENTER} ${RES_CENTER}_bak - $base_path/analyze_mass_profile.py 200 c | tee -a ${RES_CENTER} - $base_path/analyze_mass_profile.py 500 c | tee -a ${RES_CENTER} - $base_path/analyze_mass_profile.py 1500 c | tee -a ${RES_CENTER} - $base_path/analyze_mass_profile.py 2500 c | tee -a ${RES_CENTER} - $base_path/extract_tcool.py $rcool | tee -a ${RES_CENTER} - $base_path/fg_2500_500.py c | tee -a ${RES_CENTER} - exit 0 -fi -## central value }}} - -# clean previous files -rm -f summary_overdensity.qdp -rm -f summary_mass_profile.qdp -rm -f summary_gas_mass_profile.qdp -rm -f summary_entropy.qdp - - -# Estimate the errors of Lx and Fx by Monte Carlo simulation -printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n" -MC_TIMES=100 -for i in `seq 1 ${MC_TIMES}`; do - $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat - $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat - - # temperature profile - ${base_path}/${PROG_TPROFILE} temp_shuffled_t.dat ${t_param_file} \ - ${cm_per_pixel} 2> /dev/null - mv -f ${T_dump} ${T_file} - - # clear ${TMP_SBP_CFG} - TMP_SBP_CFG="temp_sbp.cfg" - # : > ${TMP_SBP_CFG} - [ -e "${TMP_SBP_CFG}" ] && rm -f ${TMP_SBP_CFG} - cat ${sbp_cfg} | while read l; do - if echo "${l}" | grep -q '^sbp_file' >/dev/null; then - echo "sbp_file temp_shuffled_sbp.dat" >> ${TMP_SBP_CFG} - elif echo "${l}" | grep -q '^T_file' >/dev/null; then - echo "T_file ${T_file}" >> ${TMP_SBP_CFG} - else - echo "${l}" >> ${TMP_SBP_CFG} - fi - done - - printf "## ${i} / ${MC_TIMES} ##\n" - printf "## `pwd -P` ##\n" - ${base_path}/coolfunc_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file} - ${base_path}/${SBP_PROG} ${TMP_SBP_CFG} 2> /dev/null - cat ${RES_SBPFIT} - $base_path/fit_nfw_mass mass_int.dat ${z} ${nfw_rmin_kpc} 2> /dev/null - cat nfw_dump.qdp >> summary_mass_profile.qdp - echo "no no no" >> summary_mass_profile.qdp - cat overdensity.qdp >> summary_overdensity.qdp - echo "no no no" >> summary_overdensity.qdp - cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp - echo "no no no" >> summary_gas_mass_profile.qdp - cat entropy.qdp >> summary_entropy.qdp - echo "no no no" >> summary_entropy.qdp - -done # end `while' -# recover `center_files' -cp -f ${cfunc_file_center} ${cfunc_file} -cp -f ${T_file_center} ${T_file} -printf "\n+++++++++++++++++ MONTE CARLO END +++++++++++++++++++\n" - -## analyze results -RES_TMP="_tmp_result_mrl.txt" -RES_FINAL="final_result.txt" -[ -e "${RES_TMP}" ] && mv -fv ${RES_TMP} ${RES_TMP}_bak -[ -e "${RES_FINAL}" ] && mv -fv ${RES_FINAL} ${RES_FINAL}_bak - -${base_path}/analyze_mass_profile.py 200 | tee -a ${RES_TMP} -${base_path}/analyze_mass_profile.py 500 | tee -a ${RES_TMP} -${base_path}/analyze_mass_profile.py 1500 | tee -a ${RES_TMP} -${base_path}/analyze_mass_profile.py 2500 | tee -a ${RES_TMP} - -R200_VAL=`grep '^r200' ${RES_TMP} | awk '{ print $2 }'` -R500_VAL=`grep '^r500' ${RES_TMP} | awk '{ print $2 }'` -R1500_VAL=`grep '^r1500' ${RES_TMP} | awk '{ print $2 }'` -R2500_VAL=`grep '^r2500' ${RES_TMP} | awk '{ print $2 }'` -printf "## R200: ${R200_VAL}\n" -printf "## R500: ${R500_VAL}\n" -printf "## R1500: ${R1500_VAL}\n" -printf "## R2500: ${R2500_VAL}\n" -L200E=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z $R200_VAL $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'` -L500E=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z $R500_VAL $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'` -L1500E=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z $R1500_VAL $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'` -L2500E=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z $R2500_VAL $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'` -R200E=`grep '^r200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -R500E=`grep '^r500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -R1500E=`grep '^r1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -R2500E=`grep '^r2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M200E=`grep '^m200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M500E=`grep '^m500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M1500E=`grep '^m1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M2500E=`grep '^m2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG200E=`grep '^gas_m200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG500E=`grep '^gas_m500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG1500E=`grep '^gas_m1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG2500E=`grep '^gas_m2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG200E=`grep '^gas_fraction200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG500E=`grep '^gas_fraction500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG1500E=`grep '^gas_fraction1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG2500E=`grep '^gas_fraction2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` - -printf "\n+++++++++++++++ RESULTS (${MODEL_NAME}) +++++++++++++++\n" -printf "cfg: ${cfg_file}\n" | tee -a ${RES_FINAL} -printf "model: ${MODEL_NAME}\n" | tee -a ${RES_FINAL} -printf "\n" | tee -a ${RES_FINAL} -cat ${RES_SBPFIT_CENTER} | tee -a ${RES_FINAL} -printf "\n" | tee -a ${RES_FINAL} -printf "r200= ${R200E} kpc\n" | tee -a ${RES_FINAL} -printf "m200= ${M200E} M_sun\n" | tee -a ${RES_FINAL} -printf "L200= ${L200E} erg/s\n" | tee -a ${RES_FINAL} -printf "gas_m200= ${MG200E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas_fraction200= ${FG200E} x100%%\n" | tee -a ${RES_FINAL} -printf "r500= ${R500E} kpc\n" | tee -a ${RES_FINAL} -printf "m500= ${M500E} M_sun\n" | tee -a ${RES_FINAL} -printf "L500= ${L500E} erg/s\n" | tee -a ${RES_FINAL} -printf "gas_m500= ${MG500E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas_fraction500= ${FG500E} x100%%\n" | tee -a ${RES_FINAL} -printf "r1500= ${R1500E} kpc\n" | tee -a ${RES_FINAL} -printf "m1500= ${M1500E} M_sun\n" | tee -a ${RES_FINAL} -printf "L1500= ${L1500E} erg/s\n" | tee -a ${RES_FINAL} -printf "gas_m1500= ${MG1500E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas_fraction1500= ${FG1500E} x100%%\n" | tee -a ${RES_FINAL} -printf "r2500= ${R2500E} kpc\n" | tee -a ${RES_FINAL} -printf "m2500= ${M2500E} M_sun\n" | tee -a ${RES_FINAL} -printf "L2500= ${L2500E} erg/s\n" | tee -a ${RES_FINAL} -printf "gas_m2500= ${MG2500E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas_fraction2500= ${FG2500E} x100%%\n" | tee -a ${RES_FINAL} -printf "\n" | tee -a ${RES_FINAL} -printf "gas mass 200= ${MG200E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas fractho 200= ${FG200E} x100%%\n" | tee -a ${RES_FINAL} -printf "gas mass 500= ${MG500E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas fractho 500= ${FG500E} x100%%\n" | tee -a ${RES_FINAL} -printf "gas mass 1500= ${MG1500E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas fractho 1500= ${FG1500E} x100%%\n" | tee -a ${RES_FINAL} -printf "gas mass 2500= ${MG2500E} M_sun\n" | tee -a ${RES_FINAL} -printf "gas fractho 2500= ${FG2500E} x100%%\n" | tee -a ${RES_FINAL} -printf "\n" | tee -a ${RES_FINAL} -$base_path/extract_tcool.py $rcool | tee -a ${RES_FINAL} -$base_path/fg_2500_500.py | tee -a ${RES_FINAL} -printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n" -- cgit v1.2.2