# Copyright (c) 2017 Weitian LI # MIT license """ Manage the observation manifest in YAML format. NOTE ---- Use `ruamel.yaml`_ instead of `PyYAML`_ to preserve the comments and other structures in the YAML file. .. _`ruamel.yaml`: https://bitbucket.org/ruamel/yaml .. _`PyYAML`: http://pyyaml.org/ """ import os import argparse import logging from collections import OrderedDict import ruamel.yaml logger = logging.getLogger(__name__) class Manifest: """ Manage the observational products manifest. """ def __init__(self, filepath): self.filepath = os.path.abspath(filepath) self.manifest = ruamel.yaml.load( open(filepath), Loader=ruamel.yaml.RoundTripLoader) if self.manifest is None: self.manifest = ruamel.yaml.comments.CommentedMap() def dump(self): return ruamel.yaml.dump(self.manifest, Dumper=ruamel.yaml.RoundTripDumper) def save(self): with open(self.filepath, "w") as f: f.write(self.dump()) def show(self): print(self.dump()) def has(self, key): return True if key in self.manifest else False def get(self, key): """ Get the value of the specified item in the manifest. Parameters ---------- key : str The key of the item to be requested. Raises ------ KeyError : If the specified item doesn't exist. """ if self.has(key): return self.manifest[key] else: raise KeyError("manifest doesn't have item: '%s'" % key) def gets(self, keys, default=None, splitlist=False): """ Get the value of the specified item in the manifest. Parameters ---------- keys : list[str] A list of keys specifying the items to be requested. default : optional The default value to return if the item not exists. splitlist : bool, optional Split the item value if it is a list, making it is easier to export as CSV format. Returns ------- data : `~OrderedDict` Ordered dictionary containing the requested items. Returns ------- """ data = OrderedDict([ (key, self.manifest.get(key, default)) for key in keys ]) if splitlist: ds = OrderedDict() for k, v in data.items(): if isinstance(v, list): for i, vi in enumerate(v): ki = "{0}[{1}]".format(k, i) ds[ki] = vi else: ds[k] = v data = ds return data def getpath(self, key, relative=False, sep=None): """ Get the absolute path to the specified item by joining with the location of this manifest file. Parameters ---------- key : str Key of the file item relative : bool, optional Whether return the file path(s) as relative path w.r.t. the current working directory? sep : str, optional If not ``None``, join the multiple file paths with the specified separator, instead of returning a list of paths. """ value = self.get(key) cwd = os.getcwd() if isinstance(value, list): path = [os.path.join(os.path.dirname(self.filepath), f) for f in value] if relative: path = [os.path.relpath(p, start=cwd) for p in path] if sep is not None: path = sep.join(path) else: path = os.path.join(os.path.dirname(self.filepath), value) if relative: path = os.path.relpath(path, start=cwd) return path def set(self, key, value): """ Set the value of the specified item in the manifest. (Will add a new item or update an existing item.) """ self.manifest[key] = self.parse_value(value) self.save() logger.info("Set item '{0}': {1}".format(key, self.get(key))) def setpath(self, key, path): """ Get the relative path of the given file w.r.t. this manifest file, and set it to be the value of the specified item. (Will add a new item or update an existing item.) """ dirname = os.path.dirname(self.filepath) if isinstance(path, list): abspath = [os.path.abspath(p) for p in path] relpath = [os.path.relpath(p, start=dirname) for p in abspath] if len(relpath) == 1: relpath = relpath[0] else: abspath = os.path.abspath(path) relpath = os.path.relpath(abspath, start=dirname) self.manifest[key] = relpath self.save() logger.info("Set file item '{0}': {1}".format(key, self.get(key))) def add(self, key, value): """ Add the specified new item in the manifest. If the specified item already exists, raise a ``KeyError``. """ if self.has(key): raise KeyError("manifest already has item: '%s'" % key) else: self.set(key, value) def update(self, key, value): """ Update the specified existing item in the manifest. If the specified item doesn't exist, raise a ``KeyError``. """ if self.has(key): self.set(key, value) else: raise KeyError("manifest doesn't have item: '%s'" % key) def delete(self, key): """ Delete the specified item from the manifest. """ if self.has(key): del self.manifest[key] self.save() logger.info("Deleted item: '%s'" % key) else: logger.warning("manifest does not have item '%s'" % key) def rename(self, oldkey, newkey): """ Rename the specified key in the manifest. If the specified old key doesn't exist, or the new key already exists, the error ``KeyError`` is raised. """ if oldkey not in self.manifest: raise KeyError("manifest doesn't have item: '%s'" % oldkey) if newkey in self.manifest: raise KeyError("manifest already has item: '%s'" % newkey) # Add item with the new key self.manifest[newkey] = self.manifest[oldkey] # Delete old item del self.manifest[oldkey] self.save() logger.info("Renamed item key: '%s' -> '%s'" % (oldkey, newkey)) @classmethod def parse_value(self, value): """ Parse the given (list of) value(s) from string. If the value list only has length of 1, then just return the only element without list enclosure. """ if isinstance(value, list): pv = [self.parse_value_single(v) for v in value] if len(pv) == 1: return pv[0] else: return pv else: return self.parse_value_single(value) @staticmethod def parse_value_single(value): """ Try to parse the given value from string to integer, float, boolean or string. If the input value is not string, then just ignore the parse. """ if not isinstance(value, str): return value try: v = int(value) except ValueError: try: v = float(value) except ValueError: # string/boolean if value.lower() in ["true", "yes"]: v = True elif value.lower() in ["false", "no"]: v = False else: v = value # string return v def find_manifest(filename="manifest.yaml", startdir=os.getcwd()): """ Find the specified manifest file in current directory and the upper-level directories. Parameters ---------- filename : str, optional Filename of the manifest file (default: ``manifest.yaml``) Returns ------- filepath : str Absolute path to the manifest file if found. Raises ------ FileNotFoundError : Cannot found the specified manifest """ dirname = startdir filepath = os.path.join(dirname, filename) while dirname != "/": if os.path.exists(filepath): return filepath # go upper by one level dirname = os.path.dirname(dirname) filepath = os.path.join(dirname, filename) # not found raise FileNotFoundError("cannot found manifest file: %s" % filename) def get_manifest(filename="manifest.yaml"): """ Find the manifest file and return the Manifest instance of it. Parameters ---------- filename : str, optional Filename of the manifest file (default: ``manifest.yaml``) Returns ------- manifest : `~Manifest` Manifest instance of the found manifest file. """ return Manifest(find_manifest(filename)) # COMMAND-LINE INTERFACE ---------------------------------------------------- def cmd_show(args, manifest): """ Default sub-command "show": Show manifest contents. """ manifest.show() def cmd_get(args, manifest): """ Sub-command "get": Get the value of an item in the manifest. """ if not args.brief: print("%s:" % args.key, end=" ") value = manifest.get(args.key) if isinstance(value, list): if args.field: print(value[args.field-1]) else: vs = [str(v) for v in value] print(args.separator.join(vs)) else: print(value) def cmd_getpath(args, manifest): """ Sub-command "getpath": Get the absolute path to the specified file item in the manifest. """ if not args.brief: print("%s:" % args.key, end=" ") path = manifest.getpath(args.key, relative=args.relative, sep=args.separator) print(path) def cmd_set(args, manifest): """ Sub-command "set": Set the value of an item in the manifest. (Will add a new item or update an existing item.) """ manifest.set(args.key, args.value) def cmd_setpath(args, manifest): """ Sub-command "setpath": Set the specified file item in the manifest to be the relative path of the given file w.r.t. the manifest file. """ manifest.setpath(args.key, args.value) def cmd_add(args, manifest): """ Sub-command "add": Add a new item to the manifest. """ manifest.add(args.key, args.value) def cmd_update(args, manifest): """ Sub-command "update": Update the value of an existing item in the manifest. """ manifest.update(args.key, args.value) def cmd_delete(args, manifest): """ Sub-command "delete": Delete an item from the manifest. """ manifest.delete(args.key) def cmd_rename(args, manifest): """ Sub-command "rename": Rename an item in the manifest. """ manifest.rename(args.key, args.newkey) def main(description="Manage the observation manifest (YAML format)", default_file="manifest.yaml"): parser = argparse.ArgumentParser(description=description) parser.add_argument("-F", "--file", dest="file", default=default_file, help="Manifest file (default: %s)" % default_file) parser.add_argument("-b", "--brief", dest="brief", action="store_true", help="Be brief") parser.add_argument("-C", "--directory", dest="directory", default=".", help="From where to find the manifest file") parser.add_argument("-s", "--separator", dest="separator", default=" ", help="Separator to join output list values " + "(default: whitespace)") subparsers = parser.add_subparsers(dest="cmd_name", title="sub-commands", help="additional help") # sub-command: show parser_show = subparsers.add_parser("show", help="Show manifest contents") parser_show.set_defaults(func=cmd_show) # sub-command: get parser_get = subparsers.add_parser("get", help="Get an item from manifest") parser_get.add_argument("-f", "--field", dest="field", type=int, help="which field to get (default: all fields)") parser_get.add_argument("key", help="key of the item") parser_get.set_defaults(func=cmd_get) # sub-command: getpath parser_getpath = subparsers.add_parser( "getpath", help="Get the path to a file item from manifest") parser_getpath.add_argument("-r", "--relative", dest="relative", action="store_true", help="Return relative path w.r.t. current " + "working directory instead of absolute path") parser_getpath.add_argument("key", help="key of the file item") parser_getpath.set_defaults(func=cmd_getpath) # sub-command: set parser_set = subparsers.add_parser( "set", help="Set (add/update) an item in manifest") parser_set.add_argument("key", help="key of the item") parser_set.add_argument("value", nargs="+", help="value of the item") parser_set.set_defaults(func=cmd_set) # sub-command: setpath parser_setpath = subparsers.add_parser( "setpath", help="Set a file item using relative path of given files") parser_setpath.add_argument("key", help="key of the file item") parser_setpath.add_argument("value", nargs="+", help="paths to the files") parser_setpath.set_defaults(func=cmd_setpath) # sub-command: add parser_add = subparsers.add_parser( "add", help="Add a new item to manifest") parser_add.add_argument("key", help="key of the item") parser_add.add_argument("value", nargs="+", help="value of the item") parser_add.set_defaults(func=cmd_add) # sub-command: update parser_update = subparsers.add_parser( "update", help="Update an existing item in manifest") parser_update.add_argument("key", help="key of the item") parser_update.add_argument("value", nargs="+", help="new value of the item") parser_update.set_defaults(func=cmd_update) # sub-command: delete parser_delete = subparsers.add_parser( "delete", help="Delete an item from the manifest") parser_delete.add_argument("key", help="key of the item") parser_delete.set_defaults(func=cmd_delete) # sub-command: rename parser_rename = subparsers.add_parser( "rename", help="Rename an item in the manifest") parser_rename.add_argument("key", help="old item key") parser_rename.add_argument("newkey", help="new item key") parser_rename.set_defaults(func=cmd_rename) # args = parser.parse_args() if os.path.exists(args.file): manifest_file = args.file else: manifest_file = find_manifest( args.file, startdir=os.path.abspath(args.directory)) manifest = Manifest(manifest_file) if args.cmd_name: # Dispatch sub-commands to call its specified function args.func(args, manifest) else: cmd_show(None, manifest)