## ## HOWTO ## Analyze Chandra ACIS data ## ## Weitian LI ## Updated: 2017-02-07 ## Step-by-step guide to analyze ACIS data: (1) Create new level=2 events with newest calibrations, and build "manifest.yaml" for later use: $ chandra_repro indir=. outdir=repro verbose=2 $ touch manifest.yaml $ update_manifest.py -r repro (??) build 'results.yaml' (ra_ned, dec_ned, nh, z, etc.) (2) $ mkdir -p evt bkg img spc/profile mass (3) $ cd evt $ ln -s ../*_repro_evt2.fits . (4) $ clean_evt2.py (5) $ cd ../bkg $ ln -s ../evt/evt2*_clean.fits . (6) $ make_blanksky.py (7) $ ds9 evt2*_clean.fits Select some region on the CCD edges that are as far from the extended source as possible as the *local background*, then save to a region file: 'lbkg.reg'. (8) Estimate the total photon counts within the local background region: $ dmlist "evt2*_clean.fits[sky=region(lbkg.reg)][energy=400:8000]" counts Enlarge the regions if the total photon counts are too small (e.g., say 3,000). (9) Query the redshift from NED and nH from the HEASARC nH tool (10) $ ciao_bkg_spectra.sh reg=lbkg.reg (11) $ xspec xspec> @xspec_lbkg_model.xcm xspec> fit xspec> cpd /xs xspec> pl l del xspec> @/xspec_bkgcorr.tcl (??) If the background correction does not look good, e.g., the source is very distant and compact and the emission is very faint, then it is recommended to just use the *local background*. Therefore, shrink the above 'lbkg.reg' accordingly and save as 'localbkg.reg', then extract the local background spectrum: $ punlearn dmextract $ dmextract infile="evt2_*_clean.fits[sky=region(localbkg.reg)][bin pi" \ outfile=localbkg.pi (??) Add background spectrum to manifest: $ manifest.py setpath bkg_spec (12) $ cd ../img $ ln -s ../evt/evt2*_clean.fits . $ ln -s ../bkg/bkgcorr_blanksky_lbkg.pi . # maybe 'lbkg.pi' (??) create an image (0.7-2 keV) to determine the centroid $ event2image.py -H 2000 (13) $ ds9 evt2*_clean.fits Roughly select the source center and save the region as 'cstart.reg' (??) Calculate the X-ray centroid: $ calc_centroid.py -s cstart.reg -i img_c*_e700-2000.fits -V Check whether the calculated centroid is OK; if not, manually adjust the centroid position, and overwrite 'centroid.reg' (??) Generate regions for SBP extraction (sbprofile.reg): $ make_sbprofile_reg.py -b -V (??) Generate regions for deprojected spectral analysis (rspec.reg): $ chandra_genspcreg.sh evt2_c*_clean.fits centroid.reg rspec.reg $ manifest.py setpath rspec_reg rspec.reg (15) $ cd ../spc/profile $ ln -s ../../evt/evt2*_clean.fits . $ ln -s ../../bkg/bkgcorr_blanksky_lbkg.pi . # maybe 'lbkg.pi' $ ln -s ../../img/rspec.reg img_rspec.reg (16) ds9 open 'evt2*_clean.fits' with regs 'img_rspec.reg'; adjust the regions and save as 'rspec.reg' (18) $ ciao_deproj_spectra.sh reg=rspec.reg (19) Fit the radial spectra to derive the radial temperature profile, as well as the average temperature and abundance: $ xspec xspec> @xspec_deproj.xcm xspec> fit (tweaks parameters when necessary) xspec> @/xspec_tprofile.tcl (calculate average temperature and abundance) xspec> @/xspec_avg_tz.tcl xspec> exit (20) Fix 'NULL' values in 'tprofile.qdp', 'tprofile.txt' & 'tz_average.txt' (21) $ cd ../../img; (22) create config '_expcorr.conf' (for batch process): basedir .. reg sbprofile.reg nh z temp abund (23) $ ciao_expcorr_sbp.sh basedir=.. nh= z= temp= abund= ## -------------------------------------------------------- (24) $ cd ../mass $ ln -s ../img/sbprofile.txt . $ ln -s ../spc/profile/tprofile.txt . (25) Copy the sample config files located at 'files' directory: * mass.conf * wang2012_param.txt * sbp_sbeta.conf * sbp_dbeta.conf (26) Fill 'nH', 'abund' in 'mass.conf'; and 'z' in 'sbp_sbeta.conf' and 'sbp_dbeta.conf' (27) $ fittp tprofile.txt wang2012_param.txt (28) $ qdp fit_result.qdp (check fitted temperature profile, and adjust parameter accordingly) (29) $ fitsbp sbp_sbeta.conf mass.conf # single-beta sbp $ fitsbp sbp_dbeta.conf mass.conf # double-beta sbp (30) $ qdp sbp_fit.qdp # check fitted sbp (31) $ ln -s sbp_sbeta.conf sbp.cfg # use single-beta $ ln -s sbp_dbeta.conf sbp.cfg # use double-beta (32) $ fitnfw [rmin_kpc] (33) $ qdp nfw_fit_result.qdp # check fitted nfw profile, and ajust 'rmin_kpc' (34) Update 'nfw_rmin_kpc' in 'mass.conf (35) $ fitmass mass.conf c # calculate the central values (36) $ fitmass mass.conf 2>&1 | tee mass_.log # calculate mass data (37) Update the INFO.json with calculated values from 'final_result.txt': $ collect_infodata.sh (38) $ cd ../img $ chandra_update_xcentroid.sh (39) $ cd ../spc/profile (40) $ ciao_r500avgt.sh inner=0.1 outer=0.5 # check 0.5R500 range $ ciao_r500avgt.sh inner=0.2 outer=0.5 (41) $ xspec xspec> @xspec_r500avgt_0.1-0.5.xcm xspec> fit; cpd /xs; pl l del; xspec> error 1.0 2 3 (calculate the 1 sigma errors for temperature and abundance) (42) update the following values in the INFO.json file: * 'T(0.1-0.5 R500)' * 'Z(0.1-0.5 R500)' (43) repeat the above two steps for region "0.2-0.5 R500", and update the values of 'T(0.2-0.5 R500)' and 'Z(0.2-0.5 R500)'. ## -------------------------------------------------------- (44) $ cd ../..; # in 'repro' dir $ cp -a mass lxfx; cd lxfx; (45) $ calclxfx global.cfg c 500 200 # 'c' for center values $ calclxfx global.cfg 500 200 # calc 'errors' (46) $ getlxfx . c 500 200 # for center results $ getlxfx . 500 200 # for all results (with errors) ## -------------------------------------------------------- (47) $ cd ..; cd spc/profile (48) Calculate cooling time: $ ciao_calc_ct.sh check results in file 'cooling_results.txt' (49) Calculate Csb (surface brightness concentration): $ ciao_calc_csb.sh (it will open ds9 to show the regions, modify the regions if necessary; and answer y/n/m to continue) check results in file 'csb_results.txt'