fg21sim.git/fg21sim, branch ps Simulate foreground for 21cm EoR signal detection pointsources/base.py: Partially rewrite and FIXME marks 2016-10-28T13:33:43+00:00 Aaron LI aaronly.me@outlook.com 2016-10-28T13:33:43+00:00 dbfab5d3ce42f99df4a76c165d6300d09c65e9e4 NOTE: There are many "FIXME" needs further rewrite 
NOTE: There are many "FIXME" needs further rewrite
Remove extra disclaimer 2016-10-28T13:32:36+00:00 Aaron LI aaronly.me@outlook.com 2016-10-28T13:32:36+00:00 1c2e43ebdc199136584099ec1c5ef743aff2457c 






foregrounds.py: Fix imports and update components dict
2016-10-28T13:31:53+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-28T13:31:53+00:00

e5a66770b4d3ec002134d92977d7340ae121232f












configs/20-extragalactic.conf.spec: Rewrite the [pointsources] section
2016-10-28T13:30:31+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-28T13:30:31+00:00

41ced23b10a09c9768cb79147047c7e157395b91

NOTE: there are several "FIXME" needs further updates





NOTE: there are several "FIXME" needs further updates







extragalactic/pointsource (#3)
2016-10-27T04:13:07+00:00

Jason Ma
zxma_sjtu@qq.com

2016-10-27T04:13:07+00:00

2f40f984a44c393b72a62b36cf054171dabf169d

Merge PR#3: Add new simulation component "extragalactic/pointsources", including SF, SB, RQ, FRI and FRII.

* extragalactic/pointsource: add point source simulation module

* extracgalactic/pointsource: add point source simulation module

* Add configurating spec to extragalgactic point sources.

* Modified some variables

* base.py: modified

* flux.py: modified

* fr1.py: modified

* fr2.py: modified

* pointsources.py: modified

* psparams.py: modified

* radioquiet.py: modified

* starforming.py: modified

* starbursting.py: modified

* Rewritten the comments.

* base.py: modified

* flux.py: modified

* fr1.py: modified

* fr2.py: modified

* Modified

* psparams.py: modified

* radioquiet.py: modified

* starforming.py: modified

* starbursting.py: modified

* Modified

* Modified

* Modified

* Modified

* Modified

* MOdified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Changed pointsource to pointsources

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* base.py:rewrited

* fr1.py:rewritten

* pointsources.py: rewritten

* radioquiet.py: rewritten

* Rewritten

* Rewritten

* base.py: modified

* fr1.py: modified

* fr2.py: modified

* radioquiet.py: modified

* starbursting.py: modified

* starforming.py: modified

* Fix conflicts

* fg21sim: fixed conflicts

* base.py: modified frequencies loading in _get_configs()

* Rewritten as forground.py

* fg21sim: fixed conflicts

* base.py: deteled loading for frequencies configurations.

* fr1.py: modified

* fr2.py: modified

* pointsources.py: modified

* radioquiet.py: modified

* starbursting.py: modified

* starforming.py: modified

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Deleted useless comments.

* Add pscomps to deal with multi-type PS problem.

* Add a new key.

* Fixed permission to 755.

* Rejusted PS subsections.

* Add methods to calcualte luminosity function and redshift distribution.

* Rejusted generation of samples redshift and luminosity.

* Fixed mistakes on FRII structure, added hotspots and offsets.

* Reajusted generation of samples redshift and luminosity.

* Readujsted generation of samples radii, redshifts and luminosity.

* Readujsted generation of samples radii, redshifts and luminosity.

* Fixed conflicts.

* Fixed conficts.

* Combined configurations of pointsources.

* Removed the older extragalactic configuration file.

* Fixed some mistakes.

* Fixed mistakes of drawing PS.

* Fixed mistakes of drawing PS.

* Fixed code style by pep8 checking.

* Fixed code style by pep8 checking.

* Fixed code style by pep8 checking.

* Fixed some coding style.

* Reconfigured default redshift interval.

* Reconfigured default redshift interval.

* Reconfigured default redshift interval.

* Fixed mistakes in method calc_single_Tb and changed resolution of grid.

* Fixed mistakes in method calc_single_Tb and changed resolution of grid.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Fixed some mistakes.

* Fixed some mistakes.

* Changed dA from au.Mpc to float64.

* Fixed some mistakes.

* Fixed some mistakes.

* Fixed some mistakes.

* Reajusted grid resolution to generate discs.

* Reajusted grid resolution to generate discs.

* Reajusted loading strategy of parameter resolution.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.





Merge PR#3: Add new simulation component "extragalactic/pointsources", including SF, SB, RQ, FRI and FRII.

* extragalactic/pointsource: add point source simulation module

* extracgalactic/pointsource: add point source simulation module

* Add configurating spec to extragalgactic point sources.

* Modified some variables

* base.py: modified

* flux.py: modified

* fr1.py: modified

* fr2.py: modified

* pointsources.py: modified

* psparams.py: modified

* radioquiet.py: modified

* starforming.py: modified

* starbursting.py: modified

* Rewritten the comments.

* base.py: modified

* flux.py: modified

* fr1.py: modified

* fr2.py: modified

* Modified

* psparams.py: modified

* radioquiet.py: modified

* starforming.py: modified

* starbursting.py: modified

* Modified

* Modified

* Modified

* Modified

* Modified

* MOdified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Modified

* Changed pointsource to pointsources

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* Fixed some config keywords

* base.py:rewrited

* fr1.py:rewritten

* pointsources.py: rewritten

* radioquiet.py: rewritten

* Rewritten

* Rewritten

* base.py: modified

* fr1.py: modified

* fr2.py: modified

* radioquiet.py: modified

* starbursting.py: modified

* starforming.py: modified

* Fix conflicts

* fg21sim: fixed conflicts

* base.py: modified frequencies loading in _get_configs()

* Rewritten as forground.py

* fg21sim: fixed conflicts

* base.py: deteled loading for frequencies configurations.

* fr1.py: modified

* fr2.py: modified

* pointsources.py: modified

* radioquiet.py: modified

* starbursting.py: modified

* starforming.py: modified

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Add new methods to calculate Tb.

* Deleted useless comments.

* Add pscomps to deal with multi-type PS problem.

* Add a new key.

* Fixed permission to 755.

* Rejusted PS subsections.

* Add methods to calcualte luminosity function and redshift distribution.

* Rejusted generation of samples redshift and luminosity.

* Fixed mistakes on FRII structure, added hotspots and offsets.

* Reajusted generation of samples redshift and luminosity.

* Readujsted generation of samples radii, redshifts and luminosity.

* Readujsted generation of samples radii, redshifts and luminosity.

* Fixed conflicts.

* Fixed conficts.

* Combined configurations of pointsources.

* Removed the older extragalactic configuration file.

* Fixed some mistakes.

* Fixed mistakes of drawing PS.

* Fixed mistakes of drawing PS.

* Fixed code style by pep8 checking.

* Fixed code style by pep8 checking.

* Fixed code style by pep8 checking.

* Fixed some coding style.

* Reconfigured default redshift interval.

* Reconfigured default redshift interval.

* Reconfigured default redshift interval.

* Fixed mistakes in method calc_single_Tb and changed resolution of grid.

* Fixed mistakes in method calc_single_Tb and changed resolution of grid.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Deleted astropy.units style code to accelerate.

* Fixed some mistakes.

* Fixed some mistakes.

* Changed dA from au.Mpc to float64.

* Fixed some mistakes.

* Fixed some mistakes.

* Fixed some mistakes.

* Reajusted grid resolution to generate discs.

* Reajusted grid resolution to generate discs.

* Reajusted loading strategy of parameter resolution.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.

* Reajusted code style of configuration loading.







fg21sim/__init__.py: Do not import from ".foregrounds"
2016-10-27T03:23:52+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-27T03:23:52+00:00

cf4737858e68967b44e474c4a7e1f805829c18df

Import from ".foregrounds" involves a lot of imports of other
components, which cause a lot of numba JIT compilations.
Therefore, the simple "import fg21sim" causes a long lag for running the
scripts, e.g., bin/healpix2hpx.





Import from ".foregrounds" involves a lot of imports of other
components, which cause a lot of numba JIT compilations.
Therefore, the simple "import fg21sim" causes a long lag for running the
scripts, e.g., bin/healpix2hpx.







Update to use the new "checksum" config option
2016-10-27T03:18:12+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-27T03:15:35+00:00

5cbbaab825382d1fc174d5f7502947a7846d0361

Also add a warning log message for "galactic/snr.py" and
"extragalactic/clusters.py".





Also add a warning log message for "galactic/snr.py" and
"extragalactic/clusters.py".







utils/fits.py: Add parameter "checksum" for write_fits_healpix()
2016-10-27T03:12:01+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-27T03:12:01+00:00

b657912d9080d814690122a59f91fe2001717c9e

Also update the docstring and one comment.





Also update the docstring and one comment.







configs/00-general.conf.spec: Add new option "checksum"
2016-10-27T03:11:02+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-27T03:11:02+00:00

25853d9b6dccfd2c2e728ab6784c13511a922781












utils/rotate.py: Fix two bugs which cause wrong results
2016-10-26T12:35:16+00:00

Aaron LI
aaronly.me@outlook.com

2016-10-26T12:35:16+00:00

10283f5bb2b72b8b35d385636654c0a7f6f68fd0

* Fix the wrong output shape: wrongly swap the row and column
* Fix the area mapping method, which may give zero values when the index
  of the input is integer, which cause problem to calculate the
  overlapping areas.





* Fix the wrong output shape: wrongly swap the row and column
* Fix the area mapping method, which may give zero values when the index
  of the input is integer, which cause problem to calculate the
  overlapping areas.