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* clusters/solver.py: Improve documents and clean upAaron LI2017-07-221-14/+49
| | | | | | | | TODO: adaptively determine the proper time step instead of using a constant one. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters: Use "GalaxyClusters" from main.pyAaron LI2017-07-221-2/+2
| | | | | | The "clusters.py" is deprecated and will be deleted later. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/helper.py: Add "velocity_impact()" and "time_crossing()"Aaron LI2017-07-221-3/+71
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/main.py: Add property "halo_configs"Aaron LI2017-07-222-28/+44
| | | | | | And update the config specification accordingly with some cleanups. Signed-off-by: Aaron LI <aly@aaronly.me>
* Update README.rst against recent changesAaron LI2017-07-221-8/+11
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* utils/cosmology.py: Add property "baryon_fraction"Aaron LI2017-07-211-0/+9
| | | | | | XXX: assumed to be independent of redshifts! Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/main.py: Add "_magnetic_field()" methodAaron LI2017-07-212-8/+40
| | | | | | Also update the configurations Signed-off-by: Aaron LI <aly@aaronly.me>
* Add clusters/helper.pyAaron LI2017-07-211-0/+158
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* Use the global "cosmo" instance for simplificationAaron LI2017-07-214-53/+34
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* README.rst: update "development" section with DEBUG infoAaron LI2017-07-211-1/+4
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* Fix parameter names about cosmologyAaron LI2017-07-212-4/+4
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* bin/fg21sim: Setup cosmology model at the beginningAaron LI2017-07-212-4/+9
| | | | | | | | * Update copyright * Add a help on "DEBUG_FG21SIM" * Also fix a bug in cosmology setup() Signed-off-by: Aaron LI <aly@aaronly.me>
* checkers.py: Drop resolution check to avoid circular importing errorAaron LI2017-07-211-7/+0
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* configs: Default to not generate products manifestAaron LI2017-07-211-2/+4
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* utils: Import Cosmology and make "cosmo" a global instanceAaron LI2017-07-211-1/+4
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* cosmology.py: Add "setup()" method to allow update parametersAaron LI2017-07-211-11/+38
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* configs/manager.py: Add property "cosmology"Aaron LI2017-07-211-0/+15
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* foregrounds.py: Do not create products manifest if not configuredAaron LI2017-07-211-6/+15
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* configs/manager.py: get_path() return None if value is an empty stringAaron LI2017-07-211-2/+5
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* Add missing requirement "reproject"Aaron LI2017-07-202-0/+3
| | | | | | Also works with Python 3.6 (basic tests at the moment) Signed-off-by: Aaron LI <aly@aaronly.me>
* README.rst: Add a "development" installation sectionAaron LI2017-07-201-2/+12
| | | | | | Also cleanup a bit on requirements and installation guide. Signed-off-by: Aaron LI <aly@aaronly.me>
* setup.py: Fix the missing directory for scriptsAaron LI2017-07-201-1/+1
| | | | | | This fixes the installation failure bug. Signed-off-by: Aaron LI <aly@aaronly.me>
* Bump version to 0.4.2 (forgot when tagging)Aaron LI2017-07-201-1/+1
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* Update email, url, and copyright yearAaron LI2017-07-201-4/+4
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/main.py: Add basic "preprocess()" methodAaron LI2017-07-201-1/+23
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/main.py: Implement "_simulate_merger()"Aaron LI2017-07-202-15/+95
| | | | | | | | | | Simulate the formation history of each cluster and identify the last/recent major merger event. Also add new configuration option "tau_merger" and tweak several configurations options. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/formation.py: show verbose info only in DEBUGAaron LI2017-07-201-6/+9
| | | | | | | | Since the ``ClusterFormation`` is repeatedly invoked in ``GalaxyClusters``, so make the verbose information printed only at DEBUG level. Signed-off-by: Aaron LI <aly@aaronly.me>
* mergertree/show_mergertree(): Improve print formatAaron LI2017-07-201-3/+3
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/formation.py: Fix bug in "last_major_merger" propertyAaron LI2017-07-201-7/+11
| | | | | | Also calculate and add the mass ratio to the event dictionary. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/formation.py: Fix bug in "_trace_main()"Aaron LI2017-07-201-4/+8
| | | | | | | | | Do not modify the root node of the merger tree, and return this root node after tracing the formation history. Also print some more information for debug. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/mergertree.py: Add function "show_mtree()"Aaron LI2017-07-191-0/+32
| | | | | | | This function traces the main cluster and print its formation history to the screen, for easier illustration and examination. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/main.py: Add and save catalog comments for columnsAaron LI2017-07-191-6/+18
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* dataframe_to_csv(): Add parameter "comment"Aaron LI2017-07-191-4/+17
| | | | | | Also write the writer and datetime to header by default. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/main.py: GalaxyClusters implements some basic methodsAaron LI2017-07-191-8/+130
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* sky.py: Implement "random_points()" methodAaron LI2017-07-191-6/+85
| | | | | | Generate requested number of random points within the sky. Signed-off-by: Aaron LI <aly@aaronly.me>
* configs: Update default valuesAaron LI2017-07-192-12/+8
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* sky.py: frequency has implicit unit "MHz"Aaron LI2017-07-191-11/+22
| | | | | | And some minor updates Signed-off-by: Aaron LI <aly@aaronly.me>
* Small updates to comments and configuration descriptionsAaron LI2017-07-192-15/+19
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* sky.py: Default to assume a flat sky for patchAaron LI2017-07-191-5/+10
| | | | | | Use "CAR" (Cartesian) projection instead of "TAN" (tangential) projection. Signed-off-by: Aaron LI <aly@aaronly.me>
* Add utils/io.py with function "dataframe_to_csv()"Aaron LI2017-07-191-0/+47
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* Use [arcsec] as the unit for pixel size and resolutionAaron LI2017-07-199-32/+62
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/formation.py: Add "last_major_merger" propertyAaron LI2017-07-191-1/+42
| | | | | | | A new parameter "ratio_major" added to distinguish between major and minor merger events. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/formation.py: Add method "_trace_main()"Aaron LI2017-07-191-10/+77
| | | | | | Also update "simulate_megertree()" default to trace only the main cluster. Signed-off-by: Aaron LI <aly@aaronly.me>
* clusters/formation.py: Simplify parameters handlingAaron LI2017-07-191-28/+24
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* utils/transform.py: Add function "circle2ellipse()"Aaron LI2017-07-181-0/+40
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* Rename utils/rotate.py to utils/transform.pyAaron LI2017-07-182-4/+5
| | | | Signed-off-by: Aaron LI <aly@aaronly.me>
* utils/draw.py: Add function circle()Aaron LI2017-07-181-1/+62
| | | | | | Draw a circle at the center of the output grid with radial profile Signed-off-by: Aaron LI <aly@aaronly.me>
* uvsim/telescope.py: Fix station diameter to 35.0 [m]Aaron LI2017-07-041-1/+5
| | | | Also add a reference for minimum antenna separation of 1.5 [m].
* README.rst: warn that the documentation is out-of-date!Aaron LI2017-06-251-0/+4
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* LICENSE: update copyright yearAaron LI2017-06-251-1/+1
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Copyright © 2017-2018 Aaron LI. All Rights Reserved.