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* clusters/halo: Rework the turbulence acceleration timescale calculationAaron LI2017-12-312-49/+53
| | | | | | | | The new method adopted to determine the turbulence acceleration timescale follows [miniati2015] and [pinzke2017], in which the merger-induced turbulence cascades into small scales (and thus accelerate electrons) through the TTD (transit-time damping) mechanism by scattering mainly with the relativistic particles (cosmic-ray protons and electrons).
* clusters/halo: calc turbulence velocity dispersion based on mergerAaron LI2017-12-312-9/+41
| | | | | Also update the description of option "extragalactic/halos/eta_turb" and change its default value to 0.1
* clusters/halo/helper: Add fmass_nfw() to calc NFW mass profileAaron LI2017-12-311-0/+30
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* Minor cleanupsAaron LI2017-12-312-13/+24
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* Minor cleanupsAaron LI2017-12-302-6/+6
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* clusters/halo: support to drop out the most powerful halosAaron LI2017-12-302-0/+29
| | | | | The new option "extragalactic/clusters/halo_dropout" is added to specify how many halos to be dropped out.
* clusters/halo: Add virial_speed() helper functionAaron LI2017-12-301-2/+13
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* clusters/halo: Estimate turbulence acceleration w.r.t. injection scaleAaron LI2017-12-303-16/+39
| | | | The turbulence injection scale ~ halo size
* cluster/halo: Estimate halo radius ~ 0.33*R_vir (main cluster)Aaron LI2017-12-303-10/+20
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* clusters/halo: Tune the maximum acceleration timescale to 10 GyrAaron LI2017-11-161-6/+17
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* logging: report line numbers to help debugAaron LI2017-11-161-1/+1
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* README: cleanupsAaron LI2017-11-161-11/+3
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* setup.py: improve trove classifiersAaron LI2017-11-161-2/+6
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* clusters/halo: improve advection calculationAaron LI2017-11-161-10/+10
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* Deprecate np.int, np.floatAaron LI2017-11-034-9/+9
| | | | See: https://github.com/numpy/numpy/pull/6103
* fg21sim: Bump version to 0.6.3v0.6.3Aaron LI2017-10-302-6/+6
| | | | | * Update the __init__ description a bit * Add the missing parameter change for ``f_acc``
* clusters/halo: Tune default parametersAaron LI2017-10-301-4/+4
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* products.py: Add a note about updating against with sky.pyAaron LI2017-10-291-1/+3
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* Update logging messagesAaron LI2017-10-292-3/+5
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* clusters/configs: Update f_acc default to 1.0; also update descriptionsAaron LI2017-10-262-2/+8
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* utils/grid.py: Disable Numba JIT for make_ellipse() & make_grid_ellipse()Aaron LI2017-10-261-8/+0
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* clusters/halo: Calc turbulence injection scale w.r.t. sub-cluster radiusAaron LI2017-10-261-6/+8
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* configs: update option "gamma_min" default to 1 (old: 10)Aaron LI2017-10-251-1/+3
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* clusters/solver: Update buffer_np description and handlingAaron LI2017-10-252-4/+11
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* clusters/solver: Remove an empty methodAaron LI2017-10-251-8/+0
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* clusters/halo: Fix fp_advection() w.r.t. initial electron spectrum calc.Aaron LI2017-10-251-2/+4
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* clusters/halo: Adjust initial electron spectrum calculationAaron LI2017-10-252-5/+7
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* configs: two small changes; set time_step default to 0.01Aaron LI2017-10-251-4/+5
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* clusters/halo: Add method to derive the initial electron spectrumAaron LI2017-10-252-11/+56
| | | | | Also add the option "time_init" to control how long a period is used to derive the initial electron spectrum.
* clusters/halo: Fix passing the "configs" objectAaron LI2017-10-252-4/+6
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* clusters/halo: Always pass the using configsAaron LI2017-10-242-9/+12
| | | | | The user-using `configs` object may be different to the global `CONFIGS`, which may be forgotten to load the up-to-date user configurations.
* configs: Add parameter "reset" to "read_userconfig()"Aaron LI2017-10-241-12/+20
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* configs: add __getitem__() and __setitem__() methodsAaron LI2017-10-241-1/+8
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* clusters/halo: Change zbegin/zend to tstart/tsop (use cosmic time)Aaron LI2017-10-241-19/+20
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* clusters/halo: Add method "_magnetic_field()"Aaron LI2017-10-241-2/+23
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* clusters/halo: Rename property "magnetic_field" to "B_obs"Aaron LI2017-10-242-4/+4
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* clusters/halo: Allow specify magnetic field in calc_emissivity()Aaron LI2017-10-241-9/+14
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* clusters/halos: Fix halo radius calculationAaron LI2017-10-231-3/+5
| | | | Also change the parameter "nr" default to 2.0 for draw_halo() function.
* clusters/psformalism: Use functools.lru_cache()Aaron LI2017-10-231-0/+3
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* clusters/halo: merge halo_rprofile() & draw_halo(); Fix halo radius errorAaron LI2017-10-232-40/+28
| | | | | | | * Fix the error that misses to divide the halo radius by 3 for the e-folding radius, which causes the generated halo image has a 3x size! * Merge function "halo_rprofile()" into "draw_halo()" * Skip transform circular halo into elliptical one if "felong" is None
* utils/transform/circle2ellipse: skip rotation if it's NoneAaron LI2017-10-231-4/+5
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* clusters/halo: Use "lru_cache()", also improves some performanceAaron LI2017-10-233-13/+26
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* clusters/formation: Fix problem that no mergers occurredAaron LI2017-10-222-2/+9
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* clusters/halo: Add "use_max_merger" option to allow use max merger eventsAaron LI2017-10-222-24/+40
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* clusters/formation: Add method to found the maximum merger eventAaron LI2017-10-221-1/+51
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* clusters/halo: Add option "kT_out" to tune cluster temperatureAaron LI2017-10-223-5/+16
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* configs: Update option descriptionAaron LI2017-10-211-4/+5
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* clusters/halo: Rewrite turbulence acceleration & diffusion coefficient!Aaron LI2017-10-213-60/+104
| | | | | | | | | | | | The previous calculation of the turbulence acceleration efficiency has significant problems, which is too low, i.e., the acceleration timescale is too large (~10 Gyr). However, it is reported that turbulent acceleration has a timescale ~100 Myr (0.1 Gyr). I believe this problem is due to the over-simplification to the formula proposed by [cassano2005]. Rewrite the turbulence acceleration and diffusion coefficient calculations, adopting the method proposed by [brunetti2016]. To this end, two new options "f_lturb" and "f_acc" are introduced to tune the results.
* clusters/halos: Add more cluster and halo propertiesAaron LI2017-10-212-12/+39
| | | | | | * Rvir0, Rvir_main, Rvir_sub * kT_main, kT_sub (replace kT_merger) * radius -> Rhalo, angular_radius -> Rhalo_angular, B -> B0
* clusters: Fix a comment about "felong"Aaron LI2017-10-211-2/+1
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