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* clusters: rework the reuse of previously dumped cluster catalogAaron LI2018-01-022-7/+15
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* configs/checkers: add _check_file_existence() and some cleanupsAaron LI2018-01-021-14/+49
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* Minor changesAaron LI2018-01-011-1/+1
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* clusters/halo: Change option "tau_merger" to "time_traceback"Aaron LI2018-01-011-5/+5
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* clusters/halo: Rework the turbulence acceleration timescale calculationAaron LI2017-12-311-2/+14
| | | | | | | | The new method adopted to determine the turbulence acceleration timescale follows [miniati2015] and [pinzke2017], in which the merger-induced turbulence cascades into small scales (and thus accelerate electrons) through the TTD (transit-time damping) mechanism by scattering mainly with the relativistic particles (cosmic-ray protons and electrons).
* clusters/halo: calc turbulence velocity dispersion based on mergerAaron LI2017-12-311-9/+3
| | | | | Also update the description of option "extragalactic/halos/eta_turb" and change its default value to 0.1
* Minor cleanupsAaron LI2017-12-311-10/+17
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* Minor cleanupsAaron LI2017-12-301-2/+2
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* clusters/halo: support to drop out the most powerful halosAaron LI2017-12-301-0/+3
| | | | | The new option "extragalactic/clusters/halo_dropout" is added to specify how many halos to be dropped out.
* cluster/halo: Estimate halo radius ~ 0.33*R_vir (main cluster)Aaron LI2017-12-301-2/+3
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* logging: report line numbers to help debugAaron LI2017-11-161-1/+1
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* fg21sim: Bump version to 0.6.3v0.6.3Aaron LI2017-10-301-1/+1
| | | | | * Update the __init__ description a bit * Add the missing parameter change for ``f_acc``
* clusters/halo: Tune default parametersAaron LI2017-10-301-4/+4
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* clusters/configs: Update f_acc default to 1.0; also update descriptionsAaron LI2017-10-261-1/+7
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* configs: update option "gamma_min" default to 1 (old: 10)Aaron LI2017-10-251-1/+3
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* clusters/halo: Adjust initial electron spectrum calculationAaron LI2017-10-251-1/+1
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* configs: two small changes; set time_step default to 0.01Aaron LI2017-10-251-4/+5
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* clusters/halo: Add method to derive the initial electron spectrumAaron LI2017-10-251-0/+5
| | | | | Also add the option "time_init" to control how long a period is used to derive the initial electron spectrum.
* configs: Add parameter "reset" to "read_userconfig()"Aaron LI2017-10-241-12/+20
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* configs: add __getitem__() and __setitem__() methodsAaron LI2017-10-241-1/+8
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* clusters/halo: Add "use_max_merger" option to allow use max merger eventsAaron LI2017-10-221-4/+10
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* clusters/halo: Add option "kT_out" to tune cluster temperatureAaron LI2017-10-221-0/+9
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* configs: Update option descriptionAaron LI2017-10-211-4/+5
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* clusters/halo: Rewrite turbulence acceleration & diffusion coefficient!Aaron LI2017-10-211-2/+12
| | | | | | | | | | | | The previous calculation of the turbulence acceleration efficiency has significant problems, which is too low, i.e., the acceleration timescale is too large (~10 Gyr). However, it is reported that turbulent acceleration has a timescale ~100 Myr (0.1 Gyr). I believe this problem is due to the over-simplification to the formula proposed by [cassano2005]. Rewrite the turbulence acceleration and diffusion coefficient calculations, adopting the method proposed by [brunetti2016]. To this end, two new options "f_lturb" and "f_acc" are introduced to tune the results.
* clusters/halo: Determine magnetic field by fraction of its energy densityAaron LI2017-10-201-8/+4
| | | | | | | | | | * Rewrite "magnetic_field()" function to calculate the mean magnetic field strength within ICM according its energy density fraction w.r.t. the ICM thermal energy density. * Remove config options "b_mean" and "b_index", which are replaced with the option "eta_b", the assumed magnetic energy density fraction w.r.t. the ICM thermal energy density.
* clusters: Update configuration defaults and descriptionAaron LI2017-10-191-12/+12
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* clusters/halo: Support use the previously dumped halos raw dataAaron LI2017-10-192-0/+15
| | | | | | Add option "use_dump_halos_data" to control whether to just use the previously dumped halos data, therefore, the radio emissions at additional frequencies can be simply calculated.
* clusters/halo: Rewrite halos catalog and raw data saveAaron LI2017-10-191-3/+11
| | | | | Replace option "halos_dumpfile" with "halos_catalog_outfile", and use option "dump_halos_data" to control whether to dump the raw data.
* clusters: "catalog_outfile" is requiredAaron LI2017-10-191-0/+2
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* clusters/halo: Increase the time step, but require a minimum of 20 stepsAaron LI2017-10-181-1/+1
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* configs: remove "filemode" optionAaron LI2017-10-162-6/+2
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* clusters: Use "hmf" to calculate halo mass functions/distributionsAaron LI2017-10-042-13/+46
| | | | | | | | | | | | * New dependency "hmf" (halo mass functions) module * Calculate halo mass distributions/functions (dndlnm) with respect to masses and redshifts, instead of use the previous data file ("ps_data") * New section "[extragalactic][psformalism]" in configurations * New functions to write and read the dndlnm data TODO: * update the method to sample (mass, redshift) for clusters from the dndlnm data
* configs/manager.py: Add missing cosmology parametersAaron LI2017-10-041-0/+2
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* utils/cosmology.py: Add parameter Tcmb0 [K]Aaron LI2017-10-041-2/+4
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* configs: Use lower case for logging levelsAaron LI2017-10-042-14/+8
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* utils/cosmology: Add scalar spectral index "ns"Aaron LI2017-10-041-0/+2
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* configs: Clean up some commentsAaron LI2017-10-032-14/+0
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* clusters: Add option "use_output_catalog" to continue halo simulationAaron LI2017-09-032-0/+17
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* configs: Update option descriptions; also tweak checkers a bitAaron LI2017-09-032-7/+12
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* clusters: Add config option "boost"Aaron LI2017-09-011-0/+5
| | | | | | | NOTE: The cluster number (especially the bright ones) may be rather small within a sky patch. This ``boost`` config option increase the expected cluster number by a specified times, for better testing purpose.
* configs/logging: print time only, without dateAaron LI2017-09-011-1/+1
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* configs: Update clusters simulation parametersAaron LI2017-08-311-4/+4
| | | | | | | Carried many simulation tests to determine the best parameters, by comparing with the integrated counts distribution (i.e., halo luminosity function) reported in previous works (Cassano2006, Cassano2012, and Ensslin2002).
* clusters/psformalism: Remove config "f_darkmatter"Aaron LI2017-08-291-3/+0
| | | | Use "1 - baryon_fraction = 1 - Ob0/Om0" to replace "f_darkmatter".
* configs: Fix checker for "extragalactic/clusters" sectionAaron LI2017-08-291-1/+1
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* configs: update "frequencies" property to be a numpy arrayAaron LI2017-08-281-6/+7
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* configs: Update default values of some optionsAaron LI2017-08-272-7/+9
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* configs: Use "utf-8" encoding to allow unicode in config filesAaron LI2017-08-271-6/+11
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* configs: Delete obsolete checks on "{halphamap,dustmap}_unit"Aaron LI2017-08-271-4/+0
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* configs: synchrotron: default to not add smallscalesAaron LI2017-08-271-3/+5
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* freefree.py: Remove units of "halphamap" and "dustmap"Aaron LI2017-08-271-6/+4
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