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* clusters: Update the documents/comments a b itAaron LI2017-10-142-11/+6
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* clusters/solver.py: Add FokkerPlanckTests with 3 casesAaron LI2017-10-121-9/+158
| | | | | | | | The FokkerPlanckSolver is validated with all the 3 test cases! References: * Park & Petrosian 1996, ApJS, 103, 255 * Donnert & Brunetti 2014, MNRAS, 443, 3564
* clusters/solver.py: significantly improve fix_boundary()Aaron LI2017-10-121-10/+30
| | | | Also suggest that ``buffer_np`` be specified to 5%-10% of ``x_np``.
* clusters/solver.py: Small tweaksAaron LI2017-10-071-8/+6
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* clusters/solver.py: Adjust parameter tc,uc ordersAaron LI2017-10-061-10/+7
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* clusters/solver.py: Stop calc. at "tstop" by adding "tstep" parameterAaron LI2017-10-061-12/+19
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* clusters/solver.py: Update comments/references/descriptions etc.Aaron LI2017-10-061-25/+31
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* clusters/psformalism.py: Rewrite sample_z_m() methodAaron LI2017-10-042-38/+54
| | | | | Also update clusters/main.py to calculate the halo mass distributions before sampling the mass and redshifts for clusters.
* clusters: Use "hmf" to calculate halo mass functions/distributionsAaron LI2017-10-044-82/+228
| | | | | | | | | | | | * New dependency "hmf" (halo mass functions) module * Calculate halo mass distributions/functions (dndlnm) with respect to masses and redshifts, instead of use the previous data file ("ps_data") * New section "[extragalactic][psformalism]" in configurations * New functions to write and read the dndlnm data TODO: * update the method to sample (mass, redshift) for clusters from the dndlnm data
* configs/manager.py: Add missing cosmology parametersAaron LI2017-10-041-0/+2
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* utils/cosmology.py: Add parameter Tcmb0 [K]Aaron LI2017-10-042-6/+13
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* utils/units.py: Add "K2eV" and "K2keV"Aaron LI2017-10-041-0/+2
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* configs: Use lower case for logging levelsAaron LI2017-10-042-14/+8
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* utils/cosmology: Add scalar spectral index "ns"Aaron LI2017-10-042-4/+8
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* configs: Clean up some commentsAaron LI2017-10-032-14/+0
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* utils/cosmology.py: Add methods Dc() and Dc_to_redshift()Aaron LI2017-10-021-0/+48
| | | | | | * Dc(): simple wrapper on astropy cosmology's comoving_distance() * Dc_to_redshift(): determine the redshift w.r.t. the input comoving distances using interpolation.
* clusters/psformalism.py: Improve catalog commentsAaron LI2017-10-021-4/+7
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* Bump version to 0.6.1v0.6.1Aaron LI2017-09-261-1/+1
| | | | | | Component "extragalactic/clusters" is tuned and tested to work. Start working on radio relics from galaxy clusters.
* utils/units.py: Add eV and keV to temperature conversionsAaron LI2017-09-261-0/+3
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* clusters/emission: Assume electron pitch angle be pi/2Aaron LI2017-09-201-23/+17
| | | | And some cleanup and small changes
* clusters/emission: Rewrite synchrotron kernel functionAaron LI2017-09-201-9/+38
| | | | | | | | | | | Add asymptotic functions to calculate the values beyond the interpolation bounds (e.g., <1e-3 and >10), otherwise, the calculated synchrotron emissivity is overestimated at the higher frequencies. By rewrite this synchrotron kernel function, the calculated results is consistent with the theoretical/analytical results, e.g., the synchrotron radiation of a population of electrons of power-law index n is also a power-law with index (n-1)/2.
* clusters: Add option "use_output_catalog" to continue halo simulationAaron LI2017-09-033-4/+36
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* configs: Update option descriptions; also tweak checkers a bitAaron LI2017-09-032-7/+12
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* utils/io.py: Add function "csv_to_dataframe()" to support CSV commentsAaron LI2017-09-031-2/+35
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* clusters: Add config option "boost"Aaron LI2017-09-012-2/+10
| | | | | | | NOTE: The cluster number (especially the bright ones) may be rather small within a sky patch. This ``boost`` config option increase the expected cluster number by a specified times, for better testing purpose.
* configs/logging: print time only, without dateAaron LI2017-09-011-1/+1
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* Update time cost report; Also fix a variable name errorAaron LI2017-09-011-4/+4
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* Update "Fnu_to_Tb_fast()" to "Fnu_to_Tb()"Aaron LI2017-09-017-11/+11
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* utils/convert.py: Remove the slow, astropy.units based functionsAaron LI2017-09-011-64/+24
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* utils/draw.py: Replace "ellipse()" with the `skiimage' versionAaron LI2017-08-311-27/+96
| | | | | | | Also do not use Numba JIT here. Credit: scikit-image - skimage/draw/draw.py https://github.com/scikit-image/scikit-image/blob/master/skimage/draw/draw.py
* configs: Update clusters simulation parametersAaron LI2017-08-311-4/+4
| | | | | | | Carried many simulation tests to determine the best parameters, by comparing with the integrated counts distribution (i.e., halo luminosity function) reported in previous works (Cassano2006, Cassano2012, and Ensslin2002).
* utils: Add analyze.py with function "countsdist_integrate()"Aaron LI2017-08-301-0/+66
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* clusters/psformalism: Remove config "f_darkmatter"Aaron LI2017-08-293-6/+12
| | | | Use "1 - baryon_fraction = 1 - Ob0/Om0" to replace "f_darkmatter".
* configs: Fix checker for "extragalactic/clusters" sectionAaron LI2017-08-291-1/+1
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* convert.py: do not use Numba JITAaron LI2017-08-291-14/+8
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* configs: update "frequencies" property to be a numpy arrayAaron LI2017-08-281-6/+7
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* Bump version to 0.6.0, prepare for a new releasev0.6.0Aaron LI2017-08-271-5/+5
| | | | | | | Since last release (0.4.2), too many things have changed ... so skip 0.5.x to emphasis the big update ... Also update the URL to the GitHub one.
* configs: Update default values of some optionsAaron LI2017-08-272-7/+9
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* configs: Use "utf-8" encoding to allow unicode in config filesAaron LI2017-08-271-6/+11
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* freefree.py: Fix bug: "comp" -> "compID"Aaron LI2017-08-271-1/+1
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* configs: Delete obsolete checks on "{halphamap,dustmap}_unit"Aaron LI2017-08-271-4/+0
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* configs: synchrotron: default to not add smallscalesAaron LI2017-08-271-3/+5
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* freefree.py: Remove units of "halphamap" and "dustmap"Aaron LI2017-08-272-19/+4
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* clusters/halo.py: Update injection rate calculationAaron LI2017-08-261-10/+5
| | | | | The electrons are assumed to be injected throughout the whole cluster ICM/volume.
* configs: Import ConfigManager by defaultAaron LI2017-08-261-1/+1
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* Update logging messages; also remove creator __name__Aaron LI2017-08-261-0/+1
| | | | | This script is invoked on the CLI, and will have __name__ of __main__
* sky.py: Replace @header.setter with method "merge_header()"Aaron LI2017-08-261-12/+4
| | | | | * Avoid the duplicate "@header.setter" in the inherited classes * Update get-healpix-patch
* configs: Clean up unused options; clean up checkers as wellAaron LI2017-08-263-8/+4
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* sky.py: Allow to set "header"; add "add_history()"Aaron LI2017-08-261-0/+23
| | | | XXX: how to avoid the duplicate @header.setter???
* foregrounds.py: Simulate components one by one; Add timersAaron LI2017-08-261-47/+58
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