From e9bc2a7758de611f75eb53781af809e91af01189 Mon Sep 17 00:00:00 2001
From: Aaron LI <aaronly.me@outlook.com>
Date: Sat, 27 May 2017 17:11:55 +0800
Subject: Add bin/get-healpix-patch: extract patch from HEALPix map

---
 bin/get-healpix-patch | 90 +++++++++++++++++++++++++++++++++++++++++++++++++++
 setup.py              |  7 ++--
 2 files changed, 94 insertions(+), 3 deletions(-)
 create mode 100755 bin/get-healpix-patch

diff --git a/bin/get-healpix-patch b/bin/get-healpix-patch
new file mode 100755
index 0000000..8295d0b
--- /dev/null
+++ b/bin/get-healpix-patch
@@ -0,0 +1,90 @@
+#!/usr/bin/env python3
+#
+# Copyright (c) 2017 Weitian LI <weitian@aaronly.me>
+# MIT license
+#
+
+"""
+Extract a patch of sky from the all-sky HEALPix map.
+"""
+
+
+import os
+import sys
+import argparse
+import logging
+
+from reproject import reproject_from_healpix
+
+from fg21sim.configs import configs
+from fg21sim.sky import SkyPatch
+from fg21sim.utils import setup_logging
+from fg21sim.utils.fits import read_fits_healpix
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="Extract a patch from the all-sky HEALPix map")
+    parser.add_argument("-C", "--clobber", action="store_true",
+                        help="overwrite the existing output files")
+    parser.add_argument("-c", "--config", dest="config", required=False,
+                        help="fg21sim configuration from which to " +
+                        "obtain the sky patch properties")
+    parser.add_argument("--center", dest="center",
+                        help="center coordinate of the sky patch; " +
+                        "format: ra,dec; unit: deg")
+    parser.add_argument("--size", dest="size",
+                        help="size of the sky patch; " +
+                        "format: xsize,ysize; unit: pixel")
+    parser.add_argument("--pixelsize", dest="pixelsize", type=float,
+                        help="pixel size of the sky patch; unit: arcmin")
+    parser.add_argument("infile", help="input all-sky HEALPix map")
+    parser.add_argument("outfile", help="output extracted sky patch")
+    args = parser.parse_args()
+
+    setup_logging(dict_config=configs.logging)
+    tool = os.path.basename(sys.argv[0])
+    logger = logging.getLogger(tool)
+    logger.info("COMMAND: {0}".format(" ".join(sys.argv)))
+
+    if args.config:
+        configs.read_userconfig(args.config)
+        center = (configs.getn("sky/patch/xcenter"),
+                  configs.getn("sky/patch/ycenter"))  # [ deg ]
+        size = (configs.getn("sky/patch/xsize"),
+                configs.getn("sky/patch/ysize"))
+        pixelsize = configs.getn("sky/patch/pixelsize")  # [ arcmin ]
+    elif not all([args.center, args.size, args.pixelsize]):
+        raise ValueError("--center, --size, and --pixelsize are " +
+                         "required when --config is missing!")
+
+    if args.center:
+        center = args.center.split(",")
+        center = (float(center[0]), float(center[1]))
+    if args.size:
+        size = args.size.split(",")
+        size = (int(size[0]), int(size[1]))
+    if args.pixelsize:
+        pixelsize = args.pixelsize
+
+    logger.info("patch center: (%.3f, %.3f) [deg]" % center)
+    logger.info("patch size: (%d, %d) pixels" % size)
+    logger.info("patch pixel size: %.1f [arcmin]" % pixelsize)
+
+    sky = SkyPatch(size=size, pixelsize=pixelsize, center=center)
+    logger.info("Read HEALPix map from file: %s" % args.infile)
+    hpdata, hpheader = read_fits_healpix(args.infile)
+    logger.info("Reprojecting HEALPix map to sky patch ...")
+    image, __ = reproject_from_healpix(
+        input_data=(hpdata, hpheader["COORDSYS"]),
+        output_projection=sky.wcs, shape_out=size)
+    sky.header = hpheader.copy(strip=True)
+    sky.header["OBJECT"] = "Sky Patch"
+    sky.header["EXTNAME"] = "IMAGE"
+    sky.data = image
+    sky.write(args.outfile, clobber=args.clobber)
+    logger.info("Write sky patch to file: %s" % args.outfile)
+
+
+if __name__ == "__main__":
+    main()
diff --git a/setup.py b/setup.py
index 626dbb0..6fffb2c 100755
--- a/setup.py
+++ b/setup.py
@@ -1,6 +1,6 @@
 #!/usr/bin/env python3
 #
-# Copyright (c) 2016 Weitian LI <liweitianux@live.com>
+# Copyright (c) 2016-2017 Weitian LI <weitian@aaronly.me>
 # MIT license
 #
 # References:
@@ -77,12 +77,13 @@ setup(
     zip_safe=False,
     scripts=[
         "bin/fg21sim",
+        "bin/fg21sim-download-cluster-data",
+        "bin/fg21sim-download-snr-data",
         "bin/fg21sim-webui",
+        "bin/get-healpix-patch",
         "bin/healpix2hpx",
         "bin/hpx2healpix",
         "bin/zea2healpix",
-        "bin/fg21sim-download-snr-data",
-        "bin/fg21sim-download-cluster-data",
     ],
     install_requires=[
         "numpy",
-- 
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