From 7d1b2c32ab823a06bf734b24e00daa3c6f3fd03f Mon Sep 17 00:00:00 2001 From: Aaron LI Date: Wed, 19 Jul 2017 21:56:57 +0800 Subject: clusters/main.py: GalaxyClusters implements some basic methods Signed-off-by: Aaron LI --- fg21sim/extragalactic/clusters/main.py | 138 +++++++++++++++++++++++++++++++-- 1 file changed, 130 insertions(+), 8 deletions(-) (limited to 'fg21sim/extragalactic/clusters/main.py') diff --git a/fg21sim/extragalactic/clusters/main.py b/fg21sim/extragalactic/clusters/main.py index 8f7f8e7..c05af3e 100644 --- a/fg21sim/extragalactic/clusters/main.py +++ b/fg21sim/extragalactic/clusters/main.py @@ -1,24 +1,146 @@ -# Copyright (c) 2017 Weitian LI +# Copyright (c) 2017 Weitian LI # MIT license """ -Simulate (giant) radio halos of galaxy clusters as one of the -foreground components. +Simulate the extended radio emissions from the galaxy cluster, +e.g., giant radio halos, radio relics. + +NOTE +---- +There are other types of extended radio emissions not considered +yet, e.g., mini-halos, roundish radio relics, etc. """ +import os import logging import numpy as np +import pandas as pd -from .halo import HaloSingle +from .formation import ClusterFormation +from .halo import RadioHalo +from ...sky import get_sky +from ...utils.cosmology import Cosmology +from ...utils.random import spherical_uniform +from ...utils.io import dataframe_to_csv logger = logging.getLogger(__name__) -class Halos: +class GalaxyClusters: """ - Simulate (giant) radio halos of galaxy clusters as one of the - foreground components. + Simulate the extended radio emissions from the galaxy clusters. + + NOTE + ---- + Currently, only the *giant radio halos* are considered, while + other types of extended emissions are missing, e.g., mini-halos, + elongated relics, roundish relics. """ - pass + # Component name + name = "galaxy clusters" + + def __init__(self, configs): + self.configs = configs + self.sky = get_sky(configs) + self._set_configs() + + def _set_configs(self): + """ + Load the configs and set the corresponding class attributes. + """ + comp = "extragalactic/clusters" + self.catalog_path = self.configs.get_path(comp+"/catalog") + self.catalog_outfile = self.configs.get_path(comp+"/catalog_outfile") + self.prefix = self.configs.getn(comp+"/prefix") + self.save = self.configs.getn(comp+"/save") + self.output_dir = self.configs.get_path(comp+"/output_dir") + if self.sky.type_ == "patch": + self.resolution = self.sky.pixelsize + else: + raise NotImplementedError("TODO: full-sky simulations") + # + self.filename_pattern = self.configs.getn("output/filename_pattern") + self.use_float = self.configs.getn("output/use_float") + self.checksum = self.configs.getn("output/checksum") + self.clobber = self.configs.getn("output/clobber") + # Cosmology model + self.H0 = self.configs.getn("cosmology/H0") + self.OmegaM0 = self.configs.getn("cosmology/OmegaM0") + self.Omegab0 = self.configs.getn("cosmology/Omegab0") + self.sigma8 = self.configs.getn("cosmology/sigma8") + self.cosmo = Cosmology(H0=self.H0, Om0=self.OmegaM0, + Ob0=self.Omegab0, sigma8=self.sigma8) + # + logger.info("Loaded and set up configurations") + + def _load_catalog(self): + """ + Load the sampled (z, M) catalogs from the Press-Schechter + formalism for the clusters in this sky patch. + + Catalog columns + --------------- + * ``z`` : redshifts + * ``mass`` : cluster mass; unit: [Msun] + """ + self.catalog = pd.read_csv(self.catalog_path) + num = len(self.catalog) + logger.info("Loaded (z, M) catalog: %d clusters" % num) + + def _process_catalog(self): + """ + Do some basic processes to the catalog: + + * Generate random positions within the sky for each cluster; + * Generate random elongated fraction; + * Generate random rotation angle. + + Catalog columns + --------------- + * ``lon`` : longitudes; unit: [deg] + * ``lat`` : latitudes; unit: [deg] + * ``felong`` : elongated fraction, defined as the ratio of + elliptical semi-major axis to semi-minor axis; + restricted within [0.3, 1.0] + * ``rotation`` : rotation angle; uniformly distributed within + [0, 360.0); unit: [deg] + + NOTE + ---- + felong (elongated fraction) :: + Adopt a definition (felong = b/a) similar to the Hubble + classification for the elliptical galaxies. As for the + elliptical galaxies classification, E7 is the limit (e.g., + Wikipedia), therefore felong is also restricted within + [0.3, 1.0], and sampled from a cut and absolute normal + distribution centered at 1.0 with sigma ~0.7/3 (<= 3σ). + """ + logger.info("Preliminary processes to the catalog ...") + num = len(self.catalog) + lon, lat = self.sky.random_points(n=num) + self.catalog["lon"] = lon + self.catalog["lat"] = lat + logger.info("Added catalog columns: lon, lat.") + + felong_min = 0.3 + sigma = (1.0 - felong_min) / 3.0 + felong = 1.0 - np.abs(np.random.normal(scale=sigma, size=num)) + felong[felong < felong_min] = felong_min + logger.info("Added catalog column: felong.") + + rotation = np.random.uniform(low=0.0, high=360.0, size=num) + self.catalog["rotation"] = rotation + logger.info("Added catalog column: rotation.") + + def postprocess(self): + """ + Do some necessary post-simulation operations. + """ + # Save the effective/inuse clusters catalog + logger.info("Save the resulting catalog ...") + if self.catalog_outfile is None: + logger.warning("Catalog output file not set; skip saving!") + else: + dataframe_to_csv() -- cgit v1.2.2