# Copyright (c) 2016 Weitian LI # MIT license """ Generic drawers (a.k.a. painters) that draw some commonly used shapes. Credits ------- The ``_ellipse_in_shape`` and ``ellipse()`` functions are originally taken from project [scikit-image]_, which are licensed under the *Modified BSD* license. .. [scikit-image] skimage.draw.draw http://scikit-image.org/docs/dev/api/skimage.draw.html https://github.com/scikit-image/scikit-image/blob/master/skimage/draw/draw.py """ import numpy as np import numba as nb @nb.jit([nb.types.UniTuple(nb.int64[:], 2)(nb.types.UniTuple(nb.int64, 2), nb.types.UniTuple(nb.int64, 2), nb.types.UniTuple(nb.int64, 2)), nb.types.UniTuple(nb.int64[:], 2)(nb.int64[:], nb.int64[:], nb.int64[:])], nopython=True) def _ellipse_in_shape(shape, center, radii): """Generate coordinates of points within the ellipse bounded by shape.""" # XXX: ``numba`` currently does not support ``numpy.meshgrid`` nrow, ncol = shape r_lim = np.zeros((nrow, ncol)) for i in range(nrow): r_lim[i, :] = np.arange(float(ncol)) c_lim = np.zeros((nrow, ncol)) for i in range(ncol): c_lim[:, i] = np.arange(float(nrow)) # r_o, c_o = center r_r, c_r = radii distances = (((r_lim-r_o) / r_r) * ((r_lim-r_o) / r_r) + ((c_lim-c_o) / c_r) * ((c_lim-c_o / c_r))) xi, yi = np.nonzero(distances < 1.0) return (xi, yi) @nb.jit(nb.types.UniTuple(nb.int64[:], 2)(nb.int64, nb.int64, nb.int64, nb.int64, nb.types.UniTuple(nb.int64, 2)), nopython=True) def ellipse(r, c, r_radius, c_radius, shape): """Generate coordinates of pixels within the ellipse. XXX/NOTE -------- * Cannot figure out why ``nb.optional(nb.types.UniTuple(nb.int64, 2))`` does NOT work. Therefore, make ``shape`` as mandatory parameter instead of optional. * Cannot figure out multi-dispatch that allows both int and float types for ``r``, ``c``, ``r_radius`` and ``c_radius``. Thus only support the int type for the moment. Parameters ---------- r, c : int Center coordinate of the ellipse. r_radius, c_radius : int Minor and major semi-axes. ``(r/r_radius)**2 + (c/c_radius)**2 = 1``. shape : tuple Image shape which is used to determine the maximum extent of output pixel coordinates. This is useful for ellipses that exceed the image size. If None, the full extent of the ellipse is used. Returns ------- rr, cc : integer `~numpy.ndarray` Pixel coordinates of the ellipse. May be used to directly index into an array, e.g. ``img[rr, cc] = 1``. Examples -------- >>> from fg21sim.utils.draw import ellipse >>> img = np.zeros((10, 10), dtype=np.uint8) >>> rr, cc = ellipse(5, 5, 3, 4) >>> img[rr, cc] = 1 >>> img array([[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 1, 1, 1, 1, 0, 0], [0, 0, 1, 1, 1, 1, 1, 1, 1, 0], [0, 0, 1, 1, 1, 1, 1, 1, 1, 0], [0, 0, 1, 1, 1, 1, 1, 1, 1, 0], [0, 0, 0, 1, 1, 1, 1, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=uint8) """ center = np.array([r, c]) radii = np.array([r_radius, c_radius]) # The upper_left and lower_right corners of the # smallest rectangle containing the ellipse. upper_left = np.ceil(center - radii).astype(np.int64) lower_right = np.floor(center + radii).astype(np.int64) # Constrain upper_left and lower_right by shape boundary. upper_left = np.maximum(upper_left, np.array([0, 0])) lower_right = np.minimum(lower_right, np.array(shape)-1) shifted_center = center - upper_left bounding_shape = lower_right - upper_left + 1 rr, cc = _ellipse_in_shape(bounding_shape, shifted_center, radii) rr += upper_left[0] cc += upper_left[1] return (rr, cc)