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authorAaron LI <aly@aaronly.me>2017-10-16 13:43:21 +0800
committerAaron LI <aly@aaronly.me>2017-10-16 13:43:21 +0800
commit45ba5d2aff0dd9a7b829f301f935ff1d729b8918 (patch)
tree96af51aa3a1e16bdbe715621f68ddd670433cb6b
parent020c5df2758d299f72d4badc98f8255edfa61b3a (diff)
downloadatoolbox-45ba5d2aff0dd9a7b829f301f935ff1d729b8918.tar.bz2
astro/calc_psd.py: various cleanups
-rwxr-xr-xastro/calc_psd.py59
1 files changed, 27 insertions, 32 deletions
diff --git a/astro/calc_psd.py b/astro/calc_psd.py
index fe02b02..4661c62 100755
--- a/astro/calc_psd.py
+++ b/astro/calc_psd.py
@@ -19,11 +19,6 @@ Credit
https://www.mathworks.com/matlabcentral/fileexchange/23636-radially-averaged-power-spectrum-of-2d-real-valued-matrix
"""
-__version__ = "0.5.0"
-__date__ = "2016-04-28"
-
-
-import sys
import os
import argparse
@@ -380,36 +375,34 @@ class AstroImage:
def main():
parser = argparse.ArgumentParser(
- description="Compute the radially averaged power spectral density",
- epilog="Version: %s (%s)" % (__version__, __date__))
- parser.add_argument("-V", "--version", action="version",
- version="%(prog)s " + "%s (%s)" % (__version__, __date__))
- parser.add_argument("-C", "--clobber", dest="clobber",
- action="store_true",
- help="overwrite the output files if already exist")
- parser.add_argument("-i", "--infile", dest="infile",
- required=True, help="input image")
+ description="Calculate radially averaged power spectral density")
+ parser.add_argument("-C", "--clobber", dest="clobber", action="store_true",
+ help="overwrite the output files if already exist")
parser.add_argument("-b", "--bkgmap", dest="bkgmap", default=None,
- help="background map (for background subtraction)")
+ help="background image (for background subtraction)")
parser.add_argument("-e", "--expmap", dest="expmap", default=None,
- help="exposure map (for exposure correction)")
- parser.add_argument("-o", "--outfile", dest="outfile",
- required=True, help="output file to store the PSD data")
- parser.add_argument("-p", "--png", dest="png", default=None,
- help="plot the PSD and save (default: same basename as outfile)")
+ help="exposure map (for exposure correction)")
+ parser.add_argument("-i", "--infile", dest="infile", required=True,
+ help="input FITS image")
+ parser.add_argument("-o", "--outfile", dest="outfile", required=True,
+ help="output TXT file to save the PSD data")
+ parser.add_argument("-p", "--plot", dest="plot", action="store_true",
+ help="plot the PSD and save as PNG image")
args = parser.parse_args()
- if args.png is None:
- args.png = os.path.splitext(args.outfile)[0] + ".png"
+ if args.plot:
+ plotfile = os.path.splitext(args.outfile)[0] + ".png"
# Check output files whether already exists
if (not args.clobber) and os.path.exists(args.outfile):
- raise ValueError("outfile '%s' already exists" % args.outfile)
- if (not args.clobber) and os.path.exists(args.png):
- raise ValueError("output png '%s' already exists" % args.png)
+ raise OSError("outfile '%s' already exists" % args.outfile)
+ if args.plot:
+ if (not args.clobber) and os.path.exists(plotfile):
+ raise OSError("output plot file '%s' already exists" % plotfile)
# Load image data
- image = AstroImage(image=args.infile, expmap=args.expmap,
+ image = AstroImage(image=args.infile,
+ expmap=args.expmap,
bkgmap=args.bkgmap)
image.fix_shapes()
if args.bkgmap:
@@ -426,12 +419,14 @@ def main():
psd_data = np.column_stack((freqs, psd1d, psd1d_err))
np.savetxt(args.outfile, psd_data, header="freqs psd1d psd1d_err")
- # Make and save a plot
- fig = Figure(figsize=(10, 8))
- FigureCanvas(fig)
- ax = fig.add_subplot(111)
- psd.plot(ax=ax, fig=fig)
- fig.savefig(args.png, format="png", dpi=150)
+ if args.plot:
+ # Make and save a plot
+ fig = Figure(figsize=(10, 8))
+ FigureCanvas(fig)
+ ax = fig.add_subplot(111)
+ psd.plot(ax=ax, fig=fig)
+ fig.savefig(plotfile, format="png", dpi=150)
+ print("Plotted PSD and saved as: %s" % plotfile)
if __name__ == "__main__":