casa: Add new script add-ms.py to add multiple MSs

1 files changed, 79 insertions, 0 deletions

diff --git a/astro/casa/add-ms.py b/astro/casa/add-ms.py
new file mode 100755
index 0000000..b99b17e
--- /dev/null
+++ b/astro/casa/add-ms.py
@@ -0,0 +1,79 @@
+#!casa-script
+# -*- mode: python -*-
+#
+# Copyright (c) 2017 Aaron LI <aly@aaronly.me>
+# MIT License
+#
+
+"""
+Add the ``DATA`` column from multiple MeasurementSets.
+"""
+
+import sys
+import argparse
+import shutil
+
+# from casac.ms import ms
+
+
+def get_data(msname):
+    print("Opening MS: %s ..." % msname)
+    ms.open(msname, nomodify=True)
+    ms.selectinit(datadescid=0)
+    print("Geting MS DATA column ...")
+    rec = ms.getdata(["data"])
+    data = rec["data"]
+    print("Data mean:", data.mean())
+    ms.close()
+    print("Closed MS: %s" % msname)
+    return data
+
+
+def add_ms(msname, data2):
+    print("Opening MS: %s ..." % msname)
+    ms.open(msname, nomodify=False)
+    ms.selectinit(datadescid=0)
+    print("Geting MS DATA column ...")
+    rec = ms.getdata(["data"])
+    data1 = rec["data"]
+    print("Data mean:", data1.mean())
+    print("Adding data from other MS ...")
+    for d2 in data2:
+        data1 += d2
+    print("Output data mean:", data1.mean())
+    rec = {"data": data1}
+    print("Putting new data ...")
+    ms.putdata(rec)
+    ms.close()
+    print("Closed MS: %s" % msname)
+
+
+def main(argv):
+    parser = argparse.ArgumentParser(
+        description="Add DATA of multiple MeasurementSets")
+    parser.add_argument("-i", "--input", dest="input", nargs="+",
+                        help="two or more MeasurementSets to be added")
+    parser.add_argument("-o", "--output", dest="output", required=True,
+                        help="output MeasurementSet name")
+    args = parser.parse_args(argv)
+
+    nms = len(args.input)
+    if nms < 2:
+        raise RuntimeError("Two or more input MeasurementSets required")
+
+    print("Copying the first input MS to be the output MS ...")
+    ms1 = args.input[0]
+    msout = args.output
+    shutil.copytree(ms1, msout)
+
+    data2 = []
+    for msname in args.input[1:]:
+        data2.append(get_data(msname))
+    add_ms(msout, data2)
+
+
+if __name__ == "__main__":
+    argi = sys.argv.index("--") + 1
+    argv = sys.argv[argi:]
+    print("argv:", argv)
+    main(argv)