Move some scripts

2 files changed, 164 insertions, 0 deletions

diff --git a/julia/force_field_transform.jl b/julia/force_field_transform.jl
new file mode 100644
index 0000000..1b3872a
--- /dev/null
+++ b/julia/force_field_transform.jl
@@ -0,0 +1,135 @@
+#!/usr/bin/env julia
+# -*- coding: utf-8 -*-
+#
+# Force field transform
+#
+# Aaron LI
+# 2015/07/14
+#
+
+using FITSIO;
+#include("../julia/ndgrid.jl");
+
+@everywhere function meshgrid(vx, vy)
+    m, n = length(vy), length(vx)
+    vx = reshape(vx, 1, n)
+    vy = reshape(vy, m, 1)
+    (repmat(vx, m, 1), repmat(vy, 1, n))
+end
+
+
+# Calculate the forces between the specified point with respect to the image.
+@everywhere function force(p0, img)
+    img = copy(img);
+    x0, y0 = p0;
+    v0 = img[y0, x0];
+    img[y0, x0] = 0.0;
+    rows, cols = size(img);
+    x, y = meshgrid(1:cols, 1:rows);
+    x[y0, x0] = -1;
+    y[y0, x0] = -1;
+    f_x = v0 .* img .* (x-x0) ./ ((x-x0).^2 + (y-y0).^2).^1.5;
+    f_y = v0 .* img .* (y-y0) ./ ((x-x0).^2 + (y-y0).^2).^1.5;
+    #return (f_x, f_y);
+    return (sum(f_x), sum(f_y));
+end
+
+
+# Perform the "force field transform" for the input image.
+#
+# Return:
+#   (amplitudes, angles)
+#   amplitudes: the amplitudes of the resulting forces of each pixel
+#   angles: the directions of the resulting forces of each pixel,
+#           in unit radian.
+@everywhere function force_field_transform_serial(img, rowstart=1, rowend="end")
+    rows, cols = size(img)
+    if rowend == "end"
+        rowend = rows
+    end
+    amplitudes = zeros(rows, cols)
+    angles = zeros(rows, cols)
+    t0 = time()
+    t_p = t0 + 30  # in 30 seconds
+    for y = rowstart:rowend
+        for x = 1:cols
+            t1 = time()
+            if (t1 >= t_p)
+                percent = 100*((y-rowstart)*cols + x+1) / ((rowend-rowstart+1)*cols)
+                @printf("Worker #%d: progress: %.3f%%; %.1f min\n",
+                        myid(), percent, (t1-t0)/60.0)
+                t_p += 30  # in 30 seconds
+            end
+            F_x, F_y = force((x, y), img)
+            #@printf("F_x, F_y = (%f, %f)\n", F_x, F_y);
+            amplitudes[y, x] = sqrt(F_x^2 + F_y^2)
+            angles[y, x] = atan2(F_y, F_x)
+        end
+    end
+    t1 = time()
+    @printf("Worker #%d: finished in %.1f min!\n", myid(), (t1-t0)/60.0)
+    return (amplitudes, angles)
+end
+
+
+# parallel-capable
+function force_field_transform(img)
+    t0 = time()
+    rows, cols = size(img)
+    np = nprocs()
+    amplitudes = cell(np)
+    angles = cell(np)
+    # split rows for each process
+    rows_chunk = div(rows, np)
+    rowstart = cell(np)
+    rowend = cell(np)
+    @sync begin
+        for p = 1:np
+            rowstart[p] = 1 + rows_chunk * (p-1)
+            if p == np
+                rowend[p] = rows
+            else
+                rowend[p] = rowstart[p] + rows_chunk - 1
+            end
+            # perform transform
+            @async begin
+                amplitudes[p], angles[p] = remotecall_fetch(p,
+                        force_field_transform_serial,
+                        img, rowstart[p], rowend[p])
+            end
+        end
+    end
+    t1 = time()
+    @printf("Finished in %.1f min!\n", (t1-t0)/60.0)
+    return (sum(amplitudes), sum(angles))
+end
+
+
+# arguments
+#println(ARGS);
+if length(ARGS) != 3
+    println("Usage: PROG <input_fits_img> <out_fits_amplitudes> <out_fits_angles>");
+    exit(1);
+end
+
+infile = ARGS[1];
+outfile_ampl = ARGS[2];
+outfile_angles = ARGS[3];
+
+fits_img = FITS(infile);
+img = read(fits_img[1]);
+header = read_header(fits_img[1]);
+
+# perform force field transform
+ampl, angles = force_field_transform(img);
+
+outfits_ampl = FITS(outfile_ampl, "w");
+outfits_angles = FITS(outfile_angles, "w");
+write(outfits_ampl, ampl; header=header);
+write(outfits_angles, angles; header=header);
+
+close(fits_img);
+close(outfits_ampl);
+close(outfits_angles);
+
+#= vim: set ts=8 sw=4 tw=0 fenc=utf-8 ft=julia: =#
diff --git a/julia/force_field_transform_fft.jl b/julia/force_field_transform_fft.jl
new file mode 100644
index 0000000..c5bf905
--- /dev/null
+++ b/julia/force_field_transform_fft.jl
@@ -0,0 +1,29 @@
+# -*- coding: utf-8 -*-
+#
+# To do force field transform using FFT
+#
+# Aaron LI
+# 2015/07/16
+#
+
+function forcefieldtransform_fft(img)
+    rows, cols = size(img)
+    pic = zeros(3*rows, 3*cols)
+    pic[1:rows, 1:cols] = img
+    # unit force field
+    unit_ff = complex(zeros(3*rows, 3*cols))
+    for r = 1:(2*rows-1)
+        for c = 1:(2*cols)
+            d = (rows+cols*im) - (r+c*im)
+            if (r, c) == (rows, cols)
+                unit_ff[r, c] = 0 + 0im
+            else
+                unit_ff[r, c] = d / abs(d)^3
+            end
+        end
+    end
+    # FIXME matrix sizes
+    ff = sqrt(rows*cols) * ifft(fft(pic) .* fft(unit_ff))
+    #ff_crop = ff[rows:2*rows, cols:2*cols]
+end
+