diff options
Diffstat (limited to 'build_sample.sh')
| -rwxr-xr-x | build_sample.sh | 174 |
1 files changed, 0 insertions, 174 deletions
diff --git a/build_sample.sh b/build_sample.sh deleted file mode 100755 index 70263d1..0000000 --- a/build_sample.sh +++ /dev/null @@ -1,174 +0,0 @@ -#!/bin/sh -# -# Build and/or update the sample of studying central X-ray brightness -# excess, by only copying/updating the required products from our complete -# mass sample. -# -# Aaron LI -# Created: 2016-03-02 -# Updated: 2016-06-06 -# -# Change log: -# 2016-06-06: -# * Add argument "OWNER" -# * Split out function "copy_mass_files()" -# * Copy the `mass` related files -# 2016-04-26: -# * Add flag "UPDATE_MODE" -# * Choose the correct `img` directory for ZZH's data -# * Simplify the argument processing -# 2016-04-15: -# * Replace "_" with "-" in NAME -# * Add support for zzh's sample -# - -analyze_path() { - # extract `obs_id' and `source name' from path - echo "$@" | awk ' - # main part - { - if (NF==1) { - ## oi & name - input=($1 "/") - if (input ~ /_oi/) { - ## PATTERN: .../$name_oi$oi/... - idx_oi = match(input, /oi[0-9]+/) + 2; # "2" skip the "oi" - len_oi = RLENGTH - 2; - oi = substr(input, idx_oi, len_oi); - idx_name = match(input, /\/[a-zA-Z0-9.+-]+_oi/) + 1; - len_name = RLENGTH - 4; - name = substr(input, idx_name, len_name); - owner = "lwt"; - } - else { - ## PATTERN: .../$name/$oi/... - idx_oi = match(input, /\/[0-9]+\//) + 1; - len_oi = RLENGTH - 2; - oi = substr(input, idx_oi, len_oi); - idx_name1 = match(input, /\/[a-zA-Z0-9_.+-]+\/[0-9]+\//); - len_name1 = RLENGTH; - name1 = substr(input, idx_name1, len_name1); - idx_name = match(name1, /\/[a-zA-Z0-9_.+-]+\//) + 1; - len_name = RLENGTH - 2; - name = substr(name1, idx_name, len_name); - owner = "zzh"; - } - ## output - printf("input: %s\n", input) - printf("oi: %s\nname: %s\nowner: %s\n", oi, name, owner) - } - else { - printf("*** WARNING: invalid input: %s\n", $0) - } - } - # END { } - ' -} - - -# copy mass-related files -copy_mass_files() { - _mass_dir="$1" - _target_dir="$2" - _owner="$3" - ( \ - cd ${repro_dir}/mass; \ - if [ "${_owner}" = "lwt" ]; then \ - cp -av fitting_*.conf global.cfg wang2012_param.txt \ - flux_sbp.txt radius_sbp.txt sbprofile.txt \ - [a-z]*_center.* summary_*.* final_result.txt \ - ${target_dir}/; \ - cp -Lv tcl_temp_profile.txt ${target_dir}/; \ - else \ - cp -av global.cfg sbp.cfg param_wang.txt \ - [a-z]*_center.* summary_*.* \ - final_result.txt ${target_dir}/; \ - cp -Lv Tprofile.dat radius.dat sbp2.dat sbp3.dat ${target_dir}/; \ - fi; \ - ) - unset _mass_dir _target_dir _owner -} - - -case "$1" in - -[hH]*) - echo "Usage:" - echo " `basename $0` <lwt|zzh> <dest_root_dir> <repro_dir1> ..." - exit 1 - ;; -esac - -UPDATE_MODE="YES" - -OWNER="$1" -DEST_ROOT="$2" -if [ -n "${UPDATE_MODE}" -a ! -d "${DEST_ROOT}" ]; then - echo "UPDATE MODE: '${DEST_ROOT}' dose not exist" - exit 2 -fi -[ ! -d "${DEST_ROOT}" ] && mkdir -v "${DEST_ROOT}" - -INIT_DIR=`pwd -P` -while [ ! -z "$3" ]; do - repro_dir="$3" - shift - OI=`analyze_path "${repro_dir}" | grep '^oi:' | awk '{ print $2 }'` - NAME=`analyze_path "${repro_dir}" | grep '^name:' | awk '{ print $2 }'` - # avoid "_" in name - NAME=`echo "${NAME}" | tr '_' '-'` - echo "********* ${NAME}_oi${OI} *********" - # create directories - DEST="${DEST_ROOT}/${NAME}_oi${OI}" - if [ -n "${UPDATE_MODE}" -a ! -d "${DEST}/repro" ]; then - # skip if dest repro directory does not exist - echo "Skipped!" - continue - fi - [ ! -d "${DEST}/repro" ] && mkdir -pv ${DEST}/repro - cd "${DEST}/repro" - # copy the re-processed evt2 files - cp -av ${repro_dir}/acisf*.fits . - cp -av ${repro_dir}/acisf*.lis ${repro_dir}/pcadf*.fits . - # copy the INFO.json file if present - cp -av ${repro_dir}/*_INFO.json . - # copy the cleaned evt2 files and background files - cp -av ${repro_dir}/evt . - cp -av ${repro_dir}/bkg . - # copy the `img` directory - if [ "${OWNER}" = "lwt" ]; then - cp -av ${repro_dir}/img . - elif [ "${OWNER}" = "zzh" ]; then - img_dir="${repro_dir}/../evt2/img" - if [ -f "${img_dir}/sbprofile.txt" ]; then - cp -av ${img_dir} . - cp -av ${repro_dir}/../evt2/spc/profile/rspec.reg ./img/ - else - echo "WARNING: '${img_dir}/sbprofile.txt' does not exists" - cp -av ${repro_dir}/img . - fi - else - echo "ERROR: unknown source owner: ${OWNER}" - fi - # copy the `mass` related files - mkdir ./mass - cd ./mass - target_dir=`pwd -P` - if [ "${OWNER}" = "lwt" ]; then - copy_mass_files ${repro_dir}/mass ${target_dir} ${OWNER} - elif [ "${OWNER}" = "zzh" ]; then - if [ -d "${mass_dir}/../evt2/mass" ]; then - copy_mass_files ${repro_dir}/../evt2/mass ${target_dir} ${OWNER} - elif [ -d "${repro_dir}/mass" ]; then - copy_mass_files ${repro_dir}/mass ${target_dir} ${OWNER} - else - echo "ERROR: no mass directory found!" - fi - else - echo "ERROR: unknown source owner: ${OWNER}" - fi - cd ${target_dir} - # clean up the copied products - find . \( -iname '*_bak' -o -iname '_tmp*' \) -delete - find . -type l -iname '*.dat' -delete - cd ${INIT_DIR} -done |