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#!/bin/sh
#
# Build and/or update the sample of studying central X-ray brightness
# excess, by only copying/updating the required products from our complete
# mass sample.
#
# Aaron LI
# Created: 2016-03-02
# Updated: 2016-06-06
#
# Change log:
# 2016-06-06:
# * Add argument "OWNER"
# * Split out function "copy_mass_files()"
# * Copy the `mass` related files
# 2016-04-26:
# * Add flag "UPDATE_MODE"
# * Choose the correct `img` directory for ZZH's data
# * Simplify the argument processing
# 2016-04-15:
# * Replace "_" with "-" in NAME
# * Add support for zzh's sample
#
analyze_path() {
# extract `obs_id' and `source name' from path
echo "$@" | awk '
# main part
{
if (NF==1) {
## oi & name
input=($1 "/")
if (input ~ /_oi/) {
## PATTERN: .../$name_oi$oi/...
idx_oi = match(input, /oi[0-9]+/) + 2; # "2" skip the "oi"
len_oi = RLENGTH - 2;
oi = substr(input, idx_oi, len_oi);
idx_name = match(input, /\/[a-zA-Z0-9.+-]+_oi/) + 1;
len_name = RLENGTH - 4;
name = substr(input, idx_name, len_name);
owner = "lwt";
}
else {
## PATTERN: .../$name/$oi/...
idx_oi = match(input, /\/[0-9]+\//) + 1;
len_oi = RLENGTH - 2;
oi = substr(input, idx_oi, len_oi);
idx_name1 = match(input, /\/[a-zA-Z0-9_.+-]+\/[0-9]+\//);
len_name1 = RLENGTH;
name1 = substr(input, idx_name1, len_name1);
idx_name = match(name1, /\/[a-zA-Z0-9_.+-]+\//) + 1;
len_name = RLENGTH - 2;
name = substr(name1, idx_name, len_name);
owner = "zzh";
}
## output
printf("input: %s\n", input)
printf("oi: %s\nname: %s\nowner: %s\n", oi, name, owner)
}
else {
printf("*** WARNING: invalid input: %s\n", $0)
}
}
# END { }
'
}
# copy mass-related files
copy_mass_files() {
_mass_dir="$1"
_target_dir="$2"
_owner="$3"
( \
cd ${repro_dir}/mass; \
if [ "${_owner}" = "lwt" ]; then \
cp -av fitting_*.conf global.cfg wang2012_param.txt \
flux_sbp.txt radius_sbp.txt sbprofile.txt \
[a-z]*_center.* summary_*.* final_result.txt \
${target_dir}/; \
cp -Lv tcl_temp_profile.txt ${target_dir}/; \
else \
cp -av global.cfg sbp.cfg param_wang.txt \
[a-z]*_center.* summary_*.* \
final_result.txt ${target_dir}/; \
cp -Lv Tprofile.dat radius.dat sbp2.dat sbp3.dat ${target_dir}/; \
fi; \
)
unset _mass_dir _target_dir _owner
}
case "$1" in
-[hH]*)
echo "Usage:"
echo " `basename $0` <lwt|zzh> <dest_root_dir> <repro_dir1> ..."
exit 1
;;
esac
UPDATE_MODE="YES"
OWNER="$1"
DEST_ROOT="$2"
if [ -n "${UPDATE_MODE}" -a ! -d "${DEST_ROOT}" ]; then
echo "UPDATE MODE: '${DEST_ROOT}' dose not exist"
exit 2
fi
[ ! -d "${DEST_ROOT}" ] && mkdir -v "${DEST_ROOT}"
INIT_DIR=`pwd -P`
while [ ! -z "$3" ]; do
repro_dir="$3"
shift
OI=`analyze_path "${repro_dir}" | grep '^oi:' | awk '{ print $2 }'`
NAME=`analyze_path "${repro_dir}" | grep '^name:' | awk '{ print $2 }'`
# avoid "_" in name
NAME=`echo "${NAME}" | tr '_' '-'`
echo "********* ${NAME}_oi${OI} *********"
# create directories
DEST="${DEST_ROOT}/${NAME}_oi${OI}"
if [ -n "${UPDATE_MODE}" -a ! -d "${DEST}/repro" ]; then
# skip if dest repro directory does not exist
echo "Skipped!"
continue
fi
[ ! -d "${DEST}/repro" ] && mkdir -pv ${DEST}/repro
cd "${DEST}/repro"
# copy the re-processed evt2 files
cp -av ${repro_dir}/acisf*.fits .
cp -av ${repro_dir}/acisf*.lis ${repro_dir}/pcadf*.fits .
# copy the INFO.json file if present
cp -av ${repro_dir}/*_INFO.json .
# copy the cleaned evt2 files and background files
cp -av ${repro_dir}/evt .
cp -av ${repro_dir}/bkg .
# copy the `img` directory
if [ "${OWNER}" = "lwt" ]; then
cp -av ${repro_dir}/img .
elif [ "${OWNER}" = "zzh" ]; then
img_dir="${repro_dir}/../evt2/img"
if [ -f "${img_dir}/sbprofile.txt" ]; then
cp -av ${img_dir} .
cp -av ${repro_dir}/../evt2/spc/profile/rspec.reg ./img/
else
echo "WARNING: '${img_dir}/sbprofile.txt' does not exists"
cp -av ${repro_dir}/img .
fi
else
echo "ERROR: unknown source owner: ${OWNER}"
fi
# copy the `mass` related files
mkdir ./mass
cd ./mass
target_dir=`pwd -P`
if [ "${OWNER}" = "lwt" ]; then
copy_mass_files ${repro_dir}/mass ${target_dir} ${OWNER}
elif [ "${OWNER}" = "zzh" ]; then
if [ -d "${mass_dir}/../evt2/mass" ]; then
copy_mass_files ${repro_dir}/../evt2/mass ${target_dir} ${OWNER}
elif [ -d "${repro_dir}/mass" ]; then
copy_mass_files ${repro_dir}/mass ${target_dir} ${OWNER}
else
echo "ERROR: no mass directory found!"
fi
else
echo "ERROR: unknown source owner: ${OWNER}"
fi
cd ${target_dir}
# clean up the copied products
find . \( -iname '*_bak' -o -iname '_tmp*' \) -delete
find . -type l -iname '*.dat' -delete
cd ${INIT_DIR}
done
|
