Add mass_profile tools

* These tools are mainly use to calculate the total gravitational mass
  profile, as well as the intermediate products (e.g., surface
  brightness profile fitting, gas density profile, NFW fitting, etc.)
* There are additional tools for calculating the luminosity and flux.
* These tools mainly developed by Junhua GU, and contributed by
  Weitian (Aaron) LI, and Zhenghao ZHU.

1 files changed, 139 insertions, 0 deletions

diff --git a/mass_profile/coolfunc_calc_0.7-7.sh b/mass_profile/coolfunc_calc_0.7-7.sh
new file mode 100755
index 0000000..46902a2
--- /dev/null
+++ b/mass_profile/coolfunc_calc_0.7-7.sh
@@ -0,0 +1,139 @@
+#!/bin/sh
+#
+# unalias -a
+#
+###########################################################
+## Task:                                                 ##
+## Calc `cooling function' data according to             ##
+## given `temperature profile'                           ##
+##                                                       ##
+## NOTE:                                                 ##
+## given `tprofile': <radius> <temperature>              ##
+## calc `cooling function' by invoking `XSPEC'           ##
+## using model `wabs*apec'                               ##
+##                                                       ##
+## LIweitiaNux <liweitianux@gmail.com>                   ##
+## August 17, 2012                                       ##
+###########################################################
+
+## cmdline arguments {{{
+if [ $# -ne 5 ]; then
+    printf "usage:\n"
+    printf "    `basename $0` <tprofile> <avg_abund> <nH> <redshift> <coolfunc_outfile>\n"
+    exit 1
+fi
+base_path=`dirname $0`
+TPROFILE=$1
+ABUND_VAL=$2
+N_H=$3
+REDSHIFT=$4
+NORM=`$base_path/calc_distance $REDSHIFT|grep norm|awk '{print $2}'`
+
+echo $NORM
+
+
+COOLFUNC_DAT=$5
+#COOLFUNC_DAT_RATIO=flux_cnt_ratio.txt
+
+if [ ! -r "${TPROFILE}" ]; then
+    printf "ERROR: given tprofile '${TPROFILE}' NOT accessiable\n"
+    exit 2
+fi
+[ -e "${COOLFUNC_DAT}" ] && rm -f ${COOLFUNC_DAT}
+#[ -e "${COOLFUNC_DAT_RATIO}" ] && rm -f ${COOLFUNC_DAT_RATIO}
+## arguments }}}
+
+## specify variable name outside while loop
+## otherwise the inside vars invisible
+XSPEC_CF_XCM="_coolfunc_calc.xcm"
+[ -e "${XSPEC_CF_XCM}" ] && rm -f ${XSPEC_CF_XCM}
+
+## generate xspec script {{{
+cat >> ${XSPEC_CF_XCM} << _EOF_
+## XSPEC Tcl script
+## calc cooling function data
+##
+## generated by: `basename $0`
+## date: `date`
+
+set xs_return_results 1
+set xs_echo_script 0
+# set tcl_precision 12
+dummyrsp .01 100 4096
+## set basic data {{{
+set nh ${N_H}
+set redshift ${REDSHIFT}
+set abund_val ${ABUND_VAL}
+set norm ${NORM}
+## basic }}}
+
+## xspec related {{{
+# debug settings {{{
+chatter 0
+# debug }}}
+query yes
+abund grsa
+dummyrsp 0.3 11.0 1024
+# load model 'wabs*apec' to calc cooling function
+#model wabs*apec & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & 
+model wabs*apec & 0 & 1.0 & \${abund_val} & \${redshift} & \${norm} &
+## xspec }}}
+
+## set input and output filename
+set tpro_fn "${TPROFILE}"
+set cf_fn "${COOLFUNC_DAT}"
+##set cff_fn "${COOLFUNC_DAT_RATIO}"
+if { [ file exists \${cf_fn} ] } {
+    exec rm -fv \${cf_fn}
+}
+
+#if { [ file exists \${cff_fn} ] } {
+#    exec rm -fv \${cff_fn}
+#}
+
+## open files
+set tpro_fd [ open \${tpro_fn} r ]
+set cf_fd [ open \${cf_fn} w ]
+#set cff_fd [ open \${cff_fn} w ]
+
+## read data from tprofile line by line
+while { [ gets \${tpro_fd} tpro_line ] != -1 } {
+    # gets one line
+    scan \${tpro_line} "%f %f" radius temp_val
+    #puts "radius: \${radius}, temperature: \${temp_val}"
+    # set temperature value
+    newpar 2 \${temp_val}
+    # calc flux & tclout
+    flux 0.7 7.0
+    tclout flux 1
+    scan \${xspec_tclout} "%f %f %f %f" cf_data holder holder holder
+    #puts "cf_data: \${cf_data}"
+    puts \${cf_fd} "\${radius}    \${cf_data}"
+#    flux 0.01 100.0
+#    tclout flux 1
+#    scan \${xspec_tclout} "%f %f %f %f" cff_data holder holder holder
+#    puts \${cff_fd} "\${radius}   [expr \${cff_data}/\${cf_data}]"
+}
+
+## close opened files
+close \${tpro_fd}
+close \${cf_fd}
+
+## exit
+tclexit
+_EOF_
+
+## extract xcm }}}
+
+## invoke xspec to calc
+printf "invoking XSPEC to calculate cooling function data ...\n"
+# xspec - ${XSPEC_CF_XCM}
+xspec - ${XSPEC_CF_XCM} > /dev/null
+
+## clean
+# if [ -e "${XSPEC_CF_XCM}" ]; then
+#     rm -f ${XSPEC_CF_XCM}
+# fi
+
+exit 0
+