Add mass_profile tools

* These tools are mainly use to calculate the total gravitational mass
  profile, as well as the intermediate products (e.g., surface
  brightness profile fitting, gas density profile, NFW fitting, etc.)
* There are additional tools for calculating the luminosity and flux.
* These tools mainly developed by Junhua GU, and contributed by
  Weitian (Aaron) LI, and Zhenghao ZHU.

1 files changed, 149 insertions, 0 deletions

diff --git a/mass_profile/fit_dbeta_entropy.sh b/mass_profile/fit_dbeta_entropy.sh
new file mode 100755
index 0000000..3f1bbda
--- /dev/null
+++ b/mass_profile/fit_dbeta_entropy.sh
@@ -0,0 +1,149 @@
+#!/bin/bash
+
+echo $#
+if [ $# -eq 2 ]
+then
+    :
+else
+    echo "Usage:$0 <cfg file> <radius in kpc>"
+    exit
+fi
+export PGPLOT_FONT=`locate grfont.dat|head -1`
+
+cfg_file=$1
+base_path=`dirname $0`
+echo $base_path
+#initialize profile type name
+t_profile_type=`grep t_profile $cfg_file|awk '{print $2}'`
+#initialize data file name
+t_data_file=`grep t_data_file $cfg_file|awk '{print $2}'`
+#initialize sbp config file
+sbp_cfg=`grep sbp_cfg $cfg_file|awk '{print $2}'`
+#initialize the temperature profile file
+T_file=`grep '^T_file' $sbp_cfg|awk '{print $2}'`
+#echo $t_profile_type
+cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
+#determine which temperature profile to be used, and fit the T profile
+if [ $t_profile_type == zyy ]
+then
+    t_param_file=`grep t_param_file $cfg_file|awk '{print $2}'`
+    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
+    mv -f zyy_dump.qdp ${T_file}
+elif [ $t_profile_type == m0603246 ]
+then
+    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
+    mv -f m0603246_dump.qdp ${T_file}
+elif [ $t_profile_type == wang2012 ]
+then
+    t_param_file=`grep t_param_file $cfg_file|awk '{print $2}'`
+    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel
+    mv -f wang2012_dump.qdp ${T_file}
+elif [ $t_profile_type == allen ]
+then
+    $base_path/fit_allen_model $t_data_file $cm_per_pixel
+    mv -f allen_dump.qdp ${T_file}
+elif [ $t_profile_type == zzl ]
+then
+    t_param_file=`grep t_param_file $cfg_file|awk '{print $2}'`
+    $base_path/fit_zzl_model $t_data_file $t_param_file
+    mv -f zzl_dump.qdp ${T_file}
+else
+    echo temperature profile name invalid!
+    exit
+fi
+
+cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
+z=`grep  '^z' ${sbp_cfg}|awk '{print $2}'`
+abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
+nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
+$base_path/coolfunc_calc.sh ${T_file} $abund $nh $z $cfunc_file
+mv flux_cnt_ratio.txt flux_cnt_ratio_center_entropy.txt
+#fit sbp
+$base_path/fit_dbeta_sbp $sbp_cfg
+echo $cfunc_file
+#exit
+
+#store central valu
+mv sbp_fit.qdp sbp_fit_center_entropy.qdp
+mv mass_int.qdp mass_int_center_entropy.qdp
+mv overdensity.qdp overdensity_center_entropy.qdp
+mv gas_mass_int.qdp gas_mass_int_center_entropy.qdp
+mv entropy.qdp entropy_center.qdp
+sbp_data_file=`grep sbp_file $sbp_cfg|awk '{print $2}'`
+radius_sbp_file=`grep radius_sbp_file ${cfg_file}|awk '{print $2}'`
+
+if [ x"$radius_sbp_file" == x ]
+then
+    echo "Error, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
+    exit
+fi
+
+cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > .tmp.txt
+mv .tmp.txt ${radius_sbp_file}
+
+rm -f summary_entropy.qdp
+
+#100 times of Monte-carlo simulation to determine error
+#just repeat above steps
+for i in `seq 1 100`
+do
+    echo $t_data_file
+    $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat
+    $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat
+
+#exit
+    if [ $t_profile_type == zyy ]
+    then
+	t_param_file=`grep t_param_file $cfg_file|awk '{print $2}'`
+	$base_path/fit_zyy_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
+	mv -f zyy_dump.qdp ${T_file}
+    elif [ $t_profile_type == m0603246 ]
+    then
+	$base_path/fit_m0603246 temp_shuffled_t.dat $cm_per_pixel
+	mv -f m0603246_dump.qdp ${T_file}
+    elif [ $t_profile_type == wang2012 ]
+    then
+	t_param_file=`grep t_param_file $cfg_file|awk '{print $2}'`
+	$base_path/fit_wang2012_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
+	mv -f wang2012_dump.qdp ${T_file}
+    elif [ $t_profile_type == allen ]
+    then
+	$base_path/fit_allen_model temp_shuffled_t.dat $cm_per_pixel
+	mv -f allen_dump.qdp ${T_file}
+    elif [ $t_profile_type == zzl ]
+    then
+	t_param_file=`grep t_param_file $cfg_file|awk '{print $2}'`
+	$base_path/fit_zzl_model temp_shuffled_t.dat $t_param_file
+	mv -f zzl_dump.qdp ${T_file}
+    else
+	echo temperature profile name invalid!
+	exit
+    fi
+    
+#exit
+    echo >temp_sbp.cfg
+    
+    cat $sbp_cfg|while read l
+do
+    if echo $l|grep sbp_file >/dev/null
+    then
+	echo sbp_file temp_shuffled_sbp.dat >>temp_sbp.cfg
+    elif echo $l|grep T_file >/dev/null
+    then
+	echo T_file ${T_file} >>temp_sbp.cfg
+    else
+	echo $l >>temp_sbp.cfg
+    fi
+    
+done
+
+#$base_path/coolfunc_calc.sh ${T_file} $abund $nh $z $cfunc_file
+
+$base_path/fit_dbeta_sbp temp_sbp.cfg
+
+cat entropy.qdp >>summary_entropy.qdp
+echo no no no >>summary_entropy.qdp
+done
+
+$base_path/analyze_entropy_profile.py $2 |tee entropy_result.txt
+