diff options
| author | Aaron LI <aaronly.me@outlook.com> | 2015-06-03 14:02:51 +0800 |
|---|---|---|
| committer | Aaron LI <aaronly.me@outlook.com> | 2015-06-03 14:02:51 +0800 |
| commit | b5f43f1b99c8b181af2c657a5b95616f09ad8232 (patch) | |
| tree | 342cee06dafea1ae7692b049d217c53ebc5a9a6b /scripts/chandra_collect_data_v3.sh | |
| parent | 57ff0ed9c57a2c4bca2e7e1a592b6636e0457887 (diff) | |
| download | chandra-acis-analysis-b5f43f1b99c8b181af2c657a5b95616f09ad8232.tar.bz2 | |
Update various script to use localized pfiles to avoid collisons.
* Copy needed pfiles to current working directory, and
set environment variable $PFILES to use these first.
Thus multiple instance of CIAO tools can be run at the same
without pfiles collsions.
* Replace 'ls' with '\ls', 'grep' with '\grep'
* Many minor updates/fixes
Diffstat (limited to 'scripts/chandra_collect_data_v3.sh')
| -rwxr-xr-x | scripts/chandra_collect_data_v3.sh | 296 |
1 files changed, 155 insertions, 141 deletions
diff --git a/scripts/chandra_collect_data_v3.sh b/scripts/chandra_collect_data_v3.sh index a1b56d8..d78d1da 100755 --- a/scripts/chandra_collect_data_v3.sh +++ b/scripts/chandra_collect_data_v3.sh @@ -3,38 +3,39 @@ unalias -a export LC_COLLATE=C # fix path for python -export PATH=/usr/bin:$PATH +export PATH=/usr/bin:/usr/local/bin:$PATH ######################################################################### -## collect needed data and save to a JSON file +## Collect the calculated mass data and write to the JSON file. ## -## LIweitiaNux <liweitianux@gmail.com> +## Weitian LI <liweitianux@gmail.com> ## August 31, 2012 ## ## ChangeLogs: ## check JSON syntax, modify output to agree with the syntax ## Ref: http://json.parser.online.fr/ -## v1.1, 2012/09/05, LIweitiaNux +## v1.1, 2012/09/05, Weitian LI ## add `T_avg(0.2-0.5 R500)' and `T_err' -## v2.0, 2012/10/14, LIweitiaNux +## v2.0, 2012/10/14, Weitian LI ## add parameters -## v2.1, 2012/11/07, LIweitiaNux +## v2.1, 2012/11/07, Weitian LI ## account for `fitting_dbeta' -## v2.2, 2012/12/18, LIweitiaNux +## v2.2, 2012/12/18, Weitian LI ## add `beta' and `cooling time' parameters -## v3.0, 2013/02/09, LIweitiaNux +## v3.0, 2013/02/09, Weitian LI ## modified for `new sample info format' -## v3.1, 2013/05/18, LIweitiaNux +## v3.1, 2013/05/18, Weitian LI ## add key `Feature' -## v3.2, 2013/05/29, LIweitiaNux +## v3.2, 2013/05/29, Weitian LI ## add key `XCNTRD_RA, XCNTRD_DEC' -## v3.3, 2013/10/14, LIweitiaNux +## v3.3, 2013/10/14, Weitian LI ## add key `Unified Name' -######################################################################### - -## about, used in `usage' {{{ -VERSION="v3.0" -UPDATE="2013-02-09" -## about }}} +## v3.4, 2015/06/03, Aaron LI +## * Copy needed pfiles to current working directory, and +## set environment variable $PFILES to use these first. +## * Replaced 'grep' with '\grep', 'ls' with '\ls' +## +VERSION="v3.4" +UPDATED="2015/06/03" ## error code {{{ ERR_USG=1 @@ -56,7 +57,7 @@ case "$1" in printf "usage:\n" printf " `basename $0` json=<info_json> cfg=<main_cfg> res=<final_result> basedir=<repro_dir> massdir=<mass_dir>\n" printf "\nversion:\n" - printf "${VERSION}, ${UPDATE}\n" + printf "${VERSION}, ${UPDATED}\n" exit ${ERR_USG} ;; esac @@ -110,16 +111,16 @@ INIT_DIR=`pwd -P` # check given parameters # check given dir -if [ -d "${basedir}" ] && ls ${basedir}/*repro_evt2.fits > /dev/null 2>&1; then +if [ -d "${basedir}" ] && \ls ${basedir}/*repro_evt2.fits > /dev/null 2>&1; then BASEDIR=${basedir} -elif [ -d "${DFT_BASEDIR}" ] && ls ${DFT_BASEDIR}/*repro_evt2.fits > /dev/null 2>&1; then +elif [ -d "${DFT_BASEDIR}" ] && \ls ${DFT_BASEDIR}/*repro_evt2.fits > /dev/null 2>&1; then BASEDIR=${DFT_BASEDIR} else read -p "> basedir (contains info json): " BASEDIR if [ ! -d "${BASEDIR}" ]; then printf "ERROR: given \`${BASEDIR}' NOT a directory\n" exit ${ERR_DIR} - elif ! ls ${BASEDIR}/*repro_evt2.fits > /dev/null 2>&1; then + elif ! \ls ${BASEDIR}/*repro_evt2.fits > /dev/null 2>&1; then printf "ERROR: given \`${BASEDIR}' NOT contains needed evt files\n" exit ${ERR_DIR} fi @@ -145,8 +146,8 @@ printf "## use massdir: \`${MASS_DIR}'\n" # check json file if [ ! -z "${json}" ] && [ -r "${BASEDIR}/${json}" ]; then JSON_FILE="${json}" -elif [ "`ls ${BASEDIR}/${DFT_JSON_PAT} | wc -l`" -eq 1 ]; then - JSON_FILE=`( cd ${BASEDIR} && ls ${DFT_JSON_PAT} )` +elif [ "`\ls ${BASEDIR}/${DFT_JSON_PAT} | wc -l`" -eq 1 ]; then + JSON_FILE=`( cd ${BASEDIR} && \ls ${DFT_JSON_PAT} )` else read -p "> info json file: " JSON_FILE if ! [ -r "${BASEDIR}/${JSON_FILE}" ]; then @@ -168,7 +169,7 @@ else fi fi printf "## use main config file: \`${CFG_FILE}'\n" -SBP_CFG=`grep '^sbp_cfg' ${CFG_FILE} | awk '{ print $2 }'` +SBP_CFG=`\grep '^sbp_cfg' ${CFG_FILE} | awk '{ print $2 }'` printf "## sbp config file: \`${SBP_CFG}'\n" # check final result file if [ ! -z "${res}" ] && [ -r "${res}" ]; then @@ -198,20 +199,33 @@ IMG_DIR="${BASEDIR}/img" SPEC_DIR="${BASEDIR}/spc/profile" ## dir & file }}} +## prepare parameter files (pfiles) {{{ +CIAO_TOOLS="dmkeypar" + +# Copy necessary pfiles for localized usage +for tool in ${CIAO_TOOLS}; do + pfile=`paccess ${tool}` + [ -n "${pfile}" ] && punlearn ${tool} && cp -Lvf ${pfile} . +done + +# Modify environment variable 'PFILES' to use local pfiles first +export PFILES="./:${PFILES}" +## pfiles }}} + cd ${BASEDIR} printf "## enter directory: `pwd -P`\n" ## in dir `repro' {{{ punlearn dmkeypar -EVT_RAW=`ls *repro_evt2.fits` +EVT_RAW=`\ls *repro_evt2.fits` OBS_ID=`dmkeypar ${EVT_RAW} OBS_ID echo=yes` DATE_OBS=`dmkeypar ${EVT_RAW} DATE-OBS echo=yes` EXPOSURE_RAW=`dmkeypar ${EVT_RAW} EXPOSURE echo=yes | awk '{ print $1/1000 }'` ## ACIS_TYPE DETNAM=`dmkeypar ${EVT_RAW} DETNAM echo=yes` -if echo ${DETNAM} | grep -q 'ACIS-0123'; then +if echo ${DETNAM} | \grep -q 'ACIS-0123'; then ACIS_TYPE="ACIS-I" -elif echo ${DETNAM} | grep -q 'ACIS-[0-6]*7'; then +elif echo ${DETNAM} | \grep -q 'ACIS-[0-6]*7'; then ACIS_TYPE="ACIS-S" else printf "*** ERROR: unknown detector type: ${DETNAM}\n" @@ -221,7 +235,7 @@ fi ## in dir `repro/evt' {{{ cd ${EVT_DIR} -EVT_CLEAN=`ls evt2_c*_clean.fits` +EVT_CLEAN=`\ls evt2_c*_clean.fits` EXPOSURE_CLEAN=`dmkeypar ${EVT_CLEAN} EXPOSURE echo=yes | awk '{ print $1/1000 }'` ## dir `repro/evt' }}} @@ -229,26 +243,26 @@ EXPOSURE_CLEAN=`dmkeypar ${EVT_CLEAN} EXPOSURE echo=yes | awk '{ print $1/1000 } cd ${MASS_DIR} # misc {{{ -N_H=`grep '^nh' ${CFG_FILE} | awk '{ print $2 }'` -Z=`grep '^z' ${SBP_CFG} | awk '{ print $2 }'` -T_DATA_FILE=`grep '^t_data_file' ${CFG_FILE} | awk '{ print $2 }'` -NFW_RMIN_KPC=`grep '^nfw_rmin_kpc' ${CFG_FILE} | awk '{ print $2 }'` -E_Z=`${COSMO_CALC} ${Z} | grep -i 'Hubble_parameter' | awk '{ print $3 }'` -KPC_PER_PIXEL=`${COSMO_CALC} ${Z} | grep 'kpc/pixel' | awk '{ print $3 }'` -RADIUS_SBP_FILE=`grep '^radius_sbp_file' ${CFG_FILE} | awk '{ print $2 }'` +N_H=`\grep '^nh' ${CFG_FILE} | awk '{ print $2 }'` +Z=`\grep '^z' ${SBP_CFG} | awk '{ print $2 }'` +T_DATA_FILE=`\grep '^t_data_file' ${CFG_FILE} | awk '{ print $2 }'` +NFW_RMIN_KPC=`\grep '^nfw_rmin_kpc' ${CFG_FILE} | awk '{ print $2 }'` +E_Z=`${COSMO_CALC} ${Z} | \grep -i 'Hubble_parameter' | awk '{ print $3 }'` +KPC_PER_PIXEL=`${COSMO_CALC} ${Z} | \grep 'kpc/pixel' | awk '{ print $3 }'` +RADIUS_SBP_FILE=`\grep '^radius_sbp_file' ${CFG_FILE} | awk '{ print $2 }'` RMAX_SBP_PIX=`tail -n 1 ${RADIUS_SBP_FILE} | awk '{ print $1+$2 }'` RMAX_SBP_KPC=`echo "${RMAX_SBP_PIX} ${KPC_PER_PIXEL}" | awk '{ printf("%.2f", $1*$2) }'` SPC_DIR=`eval ${DFT_SPC_DIR_CMD}` if [ -f "${SPC_DIR}/${DFT_RSPEC_REG}" ]; then - RMAX_TPRO_PIX=`grep -iE '(pie|annulus)' ${SPC_DIR}/${DFT_RSPEC_REG} | tail -n 1 | awk -F',' '{ print $4 }'` + RMAX_TPRO_PIX=`\grep -iE '(pie|annulus)' ${SPC_DIR}/${DFT_RSPEC_REG} | tail -n 1 | awk -F',' '{ print $4 }'` RMAX_TPRO_KPC=`echo "${RMAX_TPRO_PIX} ${KPC_PER_PIXEL}" | awk '{ printf("%.2f", $1*$2) }'` fi IMG_DIR=`eval ${DFT_IMG_DIR_CMD}` -EXPCORR_CONF=`ls ${IMG_DIR}/${DFT_EXPCORR_CONF_PAT} 2> /dev/null` +EXPCORR_CONF=`\ls ${IMG_DIR}/${DFT_EXPCORR_CONF_PAT} 2> /dev/null` echo "EXPCORR_CONF: ${EXPCORR_CONF}" if [ -f "${EXPCORR_CONF}" ]; then - T_REF=`grep '^temp' ${EXPCORR_CONF} | awk '{ print $2 }'` - Z_REF=`grep '^abund' ${EXPCORR_CONF} | awk '{ print $2 }'` + T_REF=`\grep '^temp' ${EXPCORR_CONF} | awk '{ print $2 }'` + Z_REF=`\grep '^abund' ${EXPCORR_CONF} | awk '{ print $2 }'` fi [ -z "${NFW_RMIN_KPC}" ] && NFW_RMIN_KPC="null" [ -z "${RMAX_SBP_PIX}" ] && RMAX_SBP_PIX="null" @@ -258,17 +272,17 @@ fi # misc }}} ## determine single/double beta {{{ -if grep -q '^beta2' ${SBP_CFG}; then +if \grep -q '^beta2' ${SBP_CFG}; then MODEL_SBP="double-beta" - n01=`grep '^n01' ${RES_FINAL} | awk '{ print $2 }'` - beta1=`grep '^beta1' ${RES_FINAL} | awk '{ print $2 }'` - rc1=`grep -E '^rc1\s' ${RES_FINAL} | awk '{ print $2 }'` - rc1_kpc=`grep '^rc1_kpc' ${RES_FINAL} | awk '{ print $2 }'` - n02=`grep '^n02' ${RES_FINAL} | awk '{ print $2 }'` - beta2=`grep '^beta2' ${RES_FINAL} | awk '{ print $2 }'` - rc2=`grep -E '^rc2\s' ${RES_FINAL} | awk '{ print $2 }'` - rc2_kpc=`grep '^rc2_kpc' ${RES_FINAL} | awk '{ print $2 }'` - BKG=`grep '^bkg' ${RES_FINAL} | awk '{ print $2 }'` + n01=`\grep '^n01' ${RES_FINAL} | awk '{ print $2 }'` + beta1=`\grep '^beta1' ${RES_FINAL} | awk '{ print $2 }'` + rc1=`\grep -E '^rc1\s' ${RES_FINAL} | awk '{ print $2 }'` + rc1_kpc=`\grep '^rc1_kpc' ${RES_FINAL} | awk '{ print $2 }'` + n02=`\grep '^n02' ${RES_FINAL} | awk '{ print $2 }'` + beta2=`\grep '^beta2' ${RES_FINAL} | awk '{ print $2 }'` + rc2=`\grep -E '^rc2\s' ${RES_FINAL} | awk '{ print $2 }'` + rc2_kpc=`\grep '^rc2_kpc' ${RES_FINAL} | awk '{ print $2 }'` + BKG=`\grep '^bkg' ${RES_FINAL} | awk '{ print $2 }'` # beta1 -> smaller rc; beta2 -> bigger rc if [ `echo "${rc1} < ${rc2}" | bc -l` -eq 1 ]; then N01=${n01} @@ -296,30 +310,30 @@ else BETA1="null" RC1="null" RC1_KPC="null" - N02=`grep '^n0' ${RES_FINAL} | awk '{ print $2 }'` - BETA2=`grep '^beta' ${RES_FINAL} | awk '{ print $2 }'` - RC2=`grep -E '^rc\s' ${RES_FINAL} | awk '{ print $2 }'` - RC2_KPC=`grep '^rc_kpc' ${RES_FINAL} | awk '{ print $2 }'` - BKG=`grep '^bkg' ${RES_FINAL} | awk '{ print $2 }'` + N02=`\grep '^n0' ${RES_FINAL} | awk '{ print $2 }'` + BETA2=`\grep '^beta' ${RES_FINAL} | awk '{ print $2 }'` + RC2=`\grep -E '^rc\s' ${RES_FINAL} | awk '{ print $2 }'` + RC2_KPC=`\grep '^rc_kpc' ${RES_FINAL} | awk '{ print $2 }'` + BKG=`\grep '^bkg' ${RES_FINAL} | awk '{ print $2 }'` fi ## single/double beta }}} ## get `mass/virial_radius/luminosity' {{{ # 200 data {{{ -R200_VAL=`grep '^r200' ${RES_FINAL} | awk '{ print $2 }'` -R200_ERR_L=`grep '^r200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -R200_ERR_U=`grep '^r200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -M200_VAL=`grep '^m200' ${RES_FINAL} | awk '{ print $2 }'` -M200_ERR_L=`grep '^m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -M200_ERR_U=`grep '^m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -L200_VAL=`grep '^L200' ${RES_FINAL} | awk '{ print $2 }'` -L200_ERR=`grep '^L200' ${RES_FINAL} | awk '{ print $4 }'` -MGAS200_VAL=`grep '^gas_m200' ${RES_FINAL} | awk '{ print $2 }'` -MGAS200_ERR_L=`grep '^gas_m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -MGAS200_ERR_U=`grep '^gas_m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -FGAS200_VAL=`grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $2 }'` -FGAS200_ERR_L=`grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -FGAS200_ERR_U=`grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +R200_VAL=`\grep '^r200' ${RES_FINAL} | awk '{ print $2 }'` +R200_ERR_L=`\grep '^r200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +R200_ERR_U=`\grep '^r200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +M200_VAL=`\grep '^m200' ${RES_FINAL} | awk '{ print $2 }'` +M200_ERR_L=`\grep '^m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +M200_ERR_U=`\grep '^m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +L200_VAL=`\grep '^L200' ${RES_FINAL} | awk '{ print $2 }'` +L200_ERR=`\grep '^L200' ${RES_FINAL} | awk '{ print $4 }'` +MGAS200_VAL=`\grep '^gas_m200' ${RES_FINAL} | awk '{ print $2 }'` +MGAS200_ERR_L=`\grep '^gas_m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +MGAS200_ERR_U=`\grep '^gas_m200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +FGAS200_VAL=`\grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $2 }'` +FGAS200_ERR_L=`\grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +FGAS200_ERR_U=`\grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` [ -z "${R200_VAL}" ] && R200_VAL="null" [ -z "${R200_ERR_L}" ] && R200_ERR_L="null" [ -z "${R200_ERR_U}" ] && R200_ERR_U="null" @@ -336,20 +350,20 @@ FGAS200_ERR_U=`grep '^gas_fraction200' ${RES_FINAL} | awk '{ print $3 }' | awk - [ -z "${FGAS200_ERR_U}" ] && FGAS200_ERR_U="null" # 200 }}} # 500 data {{{ -R500_VAL=`grep '^r500' ${RES_FINAL} | awk '{ print $2 }'` -R500_ERR_L=`grep '^r500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -R500_ERR_U=`grep '^r500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -M500_VAL=`grep '^m500' ${RES_FINAL} | awk '{ print $2 }'` -M500_ERR_L=`grep '^m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -M500_ERR_U=`grep '^m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -L500_VAL=`grep '^L500' ${RES_FINAL} | awk '{ print $2 }'` -L500_ERR=`grep '^L500' ${RES_FINAL} | awk '{ print $4 }'` -MGAS500_VAL=`grep '^gas_m500' ${RES_FINAL} | awk '{ print $2 }'` -MGAS500_ERR_L=`grep '^gas_m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -MGAS500_ERR_U=`grep '^gas_m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -FGAS500_VAL=`grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $2 }'` -FGAS500_ERR_L=`grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -FGAS500_ERR_U=`grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +R500_VAL=`\grep '^r500' ${RES_FINAL} | awk '{ print $2 }'` +R500_ERR_L=`\grep '^r500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +R500_ERR_U=`\grep '^r500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +M500_VAL=`\grep '^m500' ${RES_FINAL} | awk '{ print $2 }'` +M500_ERR_L=`\grep '^m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +M500_ERR_U=`\grep '^m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +L500_VAL=`\grep '^L500' ${RES_FINAL} | awk '{ print $2 }'` +L500_ERR=`\grep '^L500' ${RES_FINAL} | awk '{ print $4 }'` +MGAS500_VAL=`\grep '^gas_m500' ${RES_FINAL} | awk '{ print $2 }'` +MGAS500_ERR_L=`\grep '^gas_m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +MGAS500_ERR_U=`\grep '^gas_m500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +FGAS500_VAL=`\grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $2 }'` +FGAS500_ERR_L=`\grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +FGAS500_ERR_U=`\grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` [ -z "${R500_VAL}" ] && R500_VAL="null" [ -z "${R500_ERR_L}" ] && R500_ERR_L="null" [ -z "${R500_ERR_U}" ] && R500_ERR_U="null" @@ -366,20 +380,20 @@ FGAS500_ERR_U=`grep '^gas_fraction500' ${RES_FINAL} | awk '{ print $3 }' | awk - [ -z "${FGAS500_ERR_U}" ] && FGAS500_ERR_U="null" # 500 }}} # 1500 data {{{ -R1500_VAL=`grep '^r1500' ${RES_FINAL} | awk '{ print $2 }'` -R1500_ERR_L=`grep '^r1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -R1500_ERR_U=`grep '^r1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -M1500_VAL=`grep '^m1500' ${RES_FINAL} | awk '{ print $2 }'` -M1500_ERR_L=`grep '^m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -M1500_ERR_U=`grep '^m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -L1500_VAL=`grep '^L1500' ${RES_FINAL} | awk '{ print $2 }'` -L1500_ERR=`grep '^L1500' ${RES_FINAL} | awk '{ print $4 }'` -MGAS1500_VAL=`grep '^gas_m1500' ${RES_FINAL} | awk '{ print $2 }'` -MGAS1500_ERR_L=`grep '^gas_m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -MGAS1500_ERR_U=`grep '^gas_m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -FGAS1500_VAL=`grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $2 }'` -FGAS1500_ERR_L=`grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -FGAS1500_ERR_U=`grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +R1500_VAL=`\grep '^r1500' ${RES_FINAL} | awk '{ print $2 }'` +R1500_ERR_L=`\grep '^r1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +R1500_ERR_U=`\grep '^r1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +M1500_VAL=`\grep '^m1500' ${RES_FINAL} | awk '{ print $2 }'` +M1500_ERR_L=`\grep '^m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +M1500_ERR_U=`\grep '^m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +L1500_VAL=`\grep '^L1500' ${RES_FINAL} | awk '{ print $2 }'` +L1500_ERR=`\grep '^L1500' ${RES_FINAL} | awk '{ print $4 }'` +MGAS1500_VAL=`\grep '^gas_m1500' ${RES_FINAL} | awk '{ print $2 }'` +MGAS1500_ERR_L=`\grep '^gas_m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +MGAS1500_ERR_U=`\grep '^gas_m1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +FGAS1500_VAL=`\grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $2 }'` +FGAS1500_ERR_L=`\grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +FGAS1500_ERR_U=`\grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` [ -z "${R1500_VAL}" ] && R1500_VAL="null" [ -z "${R1500_ERR_L}" ] && R1500_ERR_L="null" [ -z "${R1500_ERR_U}" ] && R1500_ERR_U="null" @@ -396,20 +410,20 @@ FGAS1500_ERR_U=`grep '^gas_fraction1500' ${RES_FINAL} | awk '{ print $3 }' | awk [ -z "${FGAS1500_ERR_U}" ] && FGAS1500_ERR_U="null" # 1500 }}} # 2500 data {{{ -R2500_VAL=`grep '^r2500' ${RES_FINAL} | awk '{ print $2 }'` -R2500_ERR_L=`grep '^r2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -R2500_ERR_U=`grep '^r2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -M2500_VAL=`grep '^m2500' ${RES_FINAL} | awk '{ print $2 }'` -M2500_ERR_L=`grep '^m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -M2500_ERR_U=`grep '^m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -L2500_VAL=`grep '^L2500' ${RES_FINAL} | awk '{ print $2 }'` -L2500_ERR=`grep '^L2500' ${RES_FINAL} | awk '{ print $4 }'` -MGAS2500_VAL=`grep '^gas_m2500' ${RES_FINAL} | awk '{ print $2 }'` -MGAS2500_ERR_L=`grep '^gas_m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -MGAS2500_ERR_U=`grep '^gas_m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` -FGAS2500_VAL=`grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $2 }'` -FGAS2500_ERR_L=`grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` -FGAS2500_ERR_U=`grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +R2500_VAL=`\grep '^r2500' ${RES_FINAL} | awk '{ print $2 }'` +R2500_ERR_L=`\grep '^r2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +R2500_ERR_U=`\grep '^r2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +M2500_VAL=`\grep '^m2500' ${RES_FINAL} | awk '{ print $2 }'` +M2500_ERR_L=`\grep '^m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +M2500_ERR_U=`\grep '^m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +L2500_VAL=`\grep '^L2500' ${RES_FINAL} | awk '{ print $2 }'` +L2500_ERR=`\grep '^L2500' ${RES_FINAL} | awk '{ print $4 }'` +MGAS2500_VAL=`\grep '^gas_m2500' ${RES_FINAL} | awk '{ print $2 }'` +MGAS2500_ERR_L=`\grep '^gas_m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +MGAS2500_ERR_U=`\grep '^gas_m2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +FGAS2500_VAL=`\grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $2 }'` +FGAS2500_ERR_L=`\grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $1 }'` +FGAS2500_ERR_U=`\grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $3 }' | awk -F'/' '{ print $2 }' | tr -d '+'` [ -z "${R2500_VAL}" ] && R2500_VAL="null" [ -z "${R2500_ERR_L}" ] && R2500_ERR_L="null" [ -z "${R2500_ERR_U}" ] && R2500_ERR_U="null" @@ -425,17 +439,17 @@ FGAS2500_ERR_U=`grep '^gas_fraction2500' ${RES_FINAL} | awk '{ print $3 }' | awk [ -z "${FGAS2500_ERR_L}" ] && FGAS2500_ERR_L="null" [ -z "${FGAS2500_ERR_U}" ] && FGAS2500_ERR_U="null" # 2500 }}} -FGRR=`grep '^gas_fraction.*r2500.*r500=' ${RES_FINAL} | sed 's/^.*r500=//' | awk '{ print $1 }'` -FGRR_ERR_L=`grep '^gas_fraction.*r2500.*r500=' ${RES_FINAL} | sed 's/^.*r500=//' | awk '{ print $2 }' | awk -F'/' '{ print $1 }'` -FGRR_ERR_U=`grep '^gas_fraction.*r2500.*r500=' ${RES_FINAL} | sed 's/^.*r500=//' | awk '{ print $2 }' | awk -F'/' '{ print $2 }' | tr -d '+'` +FGRR=`\grep '^gas_fraction.*r2500.*r500=' ${RES_FINAL} | sed 's/^.*r500=//' | awk '{ print $1 }'` +FGRR_ERR_L=`\grep '^gas_fraction.*r2500.*r500=' ${RES_FINAL} | sed 's/^.*r500=//' | awk '{ print $2 }' | awk -F'/' '{ print $1 }'` +FGRR_ERR_U=`\grep '^gas_fraction.*r2500.*r500=' ${RES_FINAL} | sed 's/^.*r500=//' | awk '{ print $2 }' | awk -F'/' '{ print $2 }' | tr -d '+'` [ -z "${FGRR}" ] && FGRR="null" [ -z "${FGRR_ERR_L}" ] && FGRR_ERR_L="null" [ -z "${FGRR_ERR_U}" ] && FGRR_ERR_U="null" ## mrl }}} ## rcool & cooling time {{{ -RCOOL=`grep '^cooling' ${RES_FINAL} | awk '{ print $4 }'` -COOLING_TIME=`grep '^cooling' ${RES_FINAL} | awk -F'=' '{ print $2 }' | tr -d ' Gyr'` +RCOOL=`\grep '^cooling' ${RES_FINAL} | awk '{ print $4 }'` +COOLING_TIME=`\grep '^cooling' ${RES_FINAL} | awk -F'=' '{ print $2 }' | tr -d ' Gyr'` [ -z "${RCOOL}" ] && RCOOL="null" [ -z "${COOLING_TIME}" ] && COOLING_TIME="null" ## cooling time }}} @@ -444,35 +458,35 @@ COOLING_TIME=`grep '^cooling' ${RES_FINAL} | awk -F'=' '{ print $2 }' | tr -d ' cd ${BASEDIR} ## orig json file {{{ printf "## collect data from original info file ...\n" -OBJ_NAME=`grep '"Source\ Name' ${JSON_FILE} | sed 's/.*"Source.*":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` -OBJ_UNAME=`grep '"Unified\ Name' ${JSON_FILE} | sed 's/.*"Unified.*":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` -OBJ_RA=`grep '"R\.\ A\.' ${JSON_FILE} | sed 's/.*"R\.\ A\.":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` -OBJ_DEC=`grep '"Dec\.' ${JSON_FILE} | sed 's/.*"Dec\.":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` -OBJ_XCRA=`grep '"XCNTRD_RA' ${JSON_FILE} | sed 's/.*"XCNTRD_RA":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` -OBJ_XCDEC=`grep '"XCNTRD_DEC' ${JSON_FILE} | sed 's/.*"XCNTRD_DEC":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` -REDSHIFT=`grep '"redshift' ${JSON_FILE} | sed 's/.*"redshift.*":\ //' | sed 's/\ *,$//'` -COOLCORE=`grep -i '"cool.*core' ${JSON_FILE} | sed 's/.*"[cC]ool.*":\ //' | sed 's/\ *,$//'` +OBJ_NAME=`\grep '"Source\ Name' ${JSON_FILE} | sed 's/.*"Source.*":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` +OBJ_UNAME=`\grep '"Unified\ Name' ${JSON_FILE} | sed 's/.*"Unified.*":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` +OBJ_RA=`\grep '"R\.\ A\.' ${JSON_FILE} | sed 's/.*"R\.\ A\.":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` +OBJ_DEC=`\grep '"Dec\.' ${JSON_FILE} | sed 's/.*"Dec\.":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` +OBJ_XCRA=`\grep '"XCNTRD_RA' ${JSON_FILE} | sed 's/.*"XCNTRD_RA":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` +OBJ_XCDEC=`\grep '"XCNTRD_DEC' ${JSON_FILE} | sed 's/.*"XCNTRD_DEC":\ //' | sed 's/^"//' | sed 's/"\ *,$//'` +REDSHIFT=`\grep '"redshift' ${JSON_FILE} | sed 's/.*"redshift.*":\ //' | sed 's/\ *,$//'` +COOLCORE=`\grep -i '"cool.*core' ${JSON_FILE} | sed 's/.*"[cC]ool.*":\ //' | sed 's/\ *,$//'` [ -z "${COOLCORE}" ] && COOLCORE="null" -OBJ_FEATURE=`grep '"Feature' ${JSON_FILE} | sed 's/.*"Feature":\ //' | sed 's/^"//' | sed 's/"\ *,*$//'` -OBJ_NOTE=`grep '"NOTE' ${JSON_FILE} | sed 's/.*"NOTE":\ //' | sed 's/^"//' | sed 's/"\ *,*$//'` +OBJ_FEATURE=`\grep '"Feature' ${JSON_FILE} | sed 's/.*"Feature":\ //' | sed 's/^"//' | sed 's/"\ *,*$//'` +OBJ_NOTE=`\grep '"NOTE' ${JSON_FILE} | sed 's/.*"NOTE":\ //' | sed 's/^"//' | sed 's/"\ *,*$//'` # T & Z {{{ -T_1R500=`grep '"T(0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -T_1ERR=`grep '"T_err(.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -T_1ERR_L=`grep '"T_err_l.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -T_1ERR_U=`grep '"T_err_u.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -Z_1R500=`grep '"Z(0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -Z_1ERR=`grep '"Z_err(.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -Z_1ERR_L=`grep '"Z_err_l.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -Z_1ERR_U=`grep '"Z_err_u.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -T_2R500=`grep '"T(0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -T_2ERR=`grep '"T_err(.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -T_2ERR_L=`grep '"T_err_l.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -T_2ERR_U=`grep '"T_err_u.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` -Z_2R500=`grep '"Z(0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -Z_2ERR=`grep '"Z_err(.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -Z_2ERR_L=`grep '"Z_err_l.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` -Z_2ERR_U=`grep '"Z_err_u.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +T_1R500=`\grep '"T(0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +T_1ERR=`\grep '"T_err(.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +T_1ERR_L=`\grep '"T_err_l.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +T_1ERR_U=`\grep '"T_err_u.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +Z_1R500=`\grep '"Z(0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +Z_1ERR=`\grep '"Z_err(.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +Z_1ERR_L=`\grep '"Z_err_l.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +Z_1ERR_U=`\grep '"Z_err_u.*0\.1.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +T_2R500=`\grep '"T(0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +T_2ERR=`\grep '"T_err(.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +T_2ERR_L=`\grep '"T_err_l.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +T_2ERR_U=`\grep '"T_err_u.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"T.*":\ //' | sed 's/\ *,$//'` +Z_2R500=`\grep '"Z(0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +Z_2ERR=`\grep '"Z_err(.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +Z_2ERR_L=`\grep '"Z_err_l.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` +Z_2ERR_U=`\grep '"Z_err_u.*0\.2.*R500' ${JSON_FILE} | sed 's/.*"Z.*":\ //' | sed 's/\ *,$//'` [ -z "${T_1R500}" ] && T_1R500="null" [ -z "${T_1ERR}" ] && T_1ERR="null" [ -z "${T_1ERR_L}" ] && T_1ERR_L="null" |