Remove chandra_update_xpeak.sh & chandra_xpeak_coord.sh

1 files changed, 0 insertions, 236 deletions

diff --git a/scripts/chandra_xpeak_coord.sh b/scripts/chandra_xpeak_coord.sh
deleted file mode 100755
index beb2698..0000000
--- a/scripts/chandra_xpeak_coord.sh
+++ /dev/null
@@ -1,236 +0,0 @@
-#!/bin/sh
-#
-###########################################################
-## get the coord of the X-ray peak in given evt file     ##
-## 1) given `evt_clean' file                             ##
-## 2) `aconvolve' and then `dmstat'                      ##
-## 3) `dmcoords' convert `sky x, y' to `ra, dec'         ##
-##                                                       ##
-## NOTES:                                                ##
-## support ACIS-I(chip: 0-3) and ACIS-S(chip: 7)         ##
-## determine by check `DETNAM' for chip number           ##
-## if `DETNAM' has `0123', then `ACIS-I'                 ##
-## if `DETNAM' has `7', then `ACIS-S'                    ##
-##                                                       ##
-## Weitian LI <liweitianux@gmail.com>                    ##
-## 2012/11/08                                            ##
-###########################################################
-##
-VERSION="v2.0"
-UPDATED="2015/06/03"
-##
-## ChangeLogs:
-## v2.0, 2015/06/03, Aaron LI
-##   * Copy needed pfiles to current working directory, and
-##     set environment variable $PFILES to use these first.
-##   * Replace 'grep' with '\grep', 'ls' with '\ls'
-## v1.1, 2012/11/08, Weitian LI
-##   get x-ray peak coord from given region file
-##
-
-## error code {{{
-ERR_USG=1
-ERR_DIR=11
-ERR_EVT=12
-ERR_BKG=13
-ERR_REG=14
-ERR_ASOL=21
-ERR_BPIX=22
-ERR_PBK=23
-ERR_MSK=24
-ERR_BKGTY=31
-ERR_SPEC=32
-ERR_DET=41
-## error code }}}
-
-## usage, help {{{
-case "$1" in
-    -[hH]*|--[hH]*)
-        printf "usage:\n"
-        printf "    `basename $0` evt=<evt_cl> asol=<asol> [ reg=<reg> chip=<chip> ]\n"
-        printf "\nversion:\n"
-        printf "${VERSION}, ${UPDATED}\n"
-        exit ${ERR_USG}
-        ;;
-esac
-## usage, help }}}
-
-## default parameters {{{
-# default `evt clean file'
-DFT_EVT="`\ls evt*clean.fits *clean*evt*.fits 2> /dev/null | head -n 1`"
-# default `asol file'
-DFT_ASOL="`\ls ../pcadf*_asol1.fits pcadf*_asol1.fits 2> /dev/null | head -n 1`"
-# default region file
-DFT_REG="`\ls sbprofile.reg rspec.reg 2> /dev/null | head -n 1`"
-## default parameters }}}
-
-## functions {{{
-# process commandline arguments
-# cmdline arg format: `KEY=VALUE'
-getopt_keyval() {
-    until [ -z "$1" ]
-    do
-        key=${1%%=*}                    # extract key
-        val=${1#*=}                     # extract value
-        keyval="${key}=\"${val}\""
-        echo "## getopt: eval '${keyval}'"
-        eval ${keyval}
-        shift                           # shift, process next one
-    done
-}
-## functions }}}
-
-## parameters {{{
-# process cmdline args using `getopt_keyval'
-getopt_keyval "$@"
-
-## check given parameters
-# check evt file
-if [ -r "${evt}" ]; then
-    EVT=${evt}
-elif [ -r "${DFT_EVT}" ]; then
-    EVT=${DFT_EVT}
-else
-    read -p "evt clean file: " EVT
-    if ! [ -r "${EVT}" ]; then
-        printf "ERROR: cannot access given \`${EVT}' evt file\n"
-        exit ${ERR_EVT}
-    fi
-fi
-printf "## use evt file: \`${EVT}'\n"
-
-# asol
-if [ ! -z "${asol}" ]; then
-    ASOL=${asol}
-elif [ -r "${DFT_ASOL}" ]; then
-    ASOL=${DFT_ASOL}
-else
-    read -p "asol file: " ASOL
-    if ! [ -r "${ASOL}" ]; then
-        printf "ERROR: cannot access given \`${ASOL}' asol file\n"
-        exit ${ERR_ASOL}
-    fi
-fi
-printf "## use asol file: \`${ASOL}'\n"
-
-# region file (optional)
-if [ ! -z "${reg}" ]; then
-    REG=${reg}
-else
-    REG=${DFT_REG}
-fi
-printf "## use reg file: \`${REG}'\n"
-
-# determine chip
-if [ ! -z "${chip}" ]; then
-    CHIP="${chip}"
-    printf "## use chip: \`${CHIP}'\n"
-else
-    # determine chip by ACIS type
-    punlearn dmkeypar
-    DETNAM=`dmkeypar ${EVT} DETNAM echo=yes`
-    if echo ${DETNAM} | \grep -q 'ACIS-0123'; then
-        printf "## \`DETNAM' (${DETNAM}) has chips 0123\n"
-        printf "## ACIS-I\n"
-        ACIS_TYPE="ACIS-I"
-        CHIP="0:3"
-    elif echo ${DETNAM} | \grep -q 'ACIS-[0-6]*7'; then
-        printf "## \`DETNAM' (${DETNAM}) has chip 7\n"
-        printf "## ACIS-S\n"
-        ACIS_TYPE="ACIS-S"
-        CHIP="7"
-    else
-        printf "ERROR: unknown detector type: ${DETNAM}\n"
-        exit ${ERR_DET}
-    fi
-fi
-## parameters }}}
-
-## prepare parameter files (pfiles) {{{
-CIAO_TOOLS="dmkeypar dmcopy dmstat dmcoords skyfov aconvolve"
-
-# Copy necessary pfiles for localized usage
-for tool in ${CIAO_TOOLS}; do
-    pfile=`paccess ${tool}`
-    [ -n "${pfile}" ] && punlearn ${tool} && cp -Lvf ${pfile} .
-done
-
-# Modify environment variable 'PFILES' to use local pfiles first
-export PFILES="./:${PFILES}"
-## pfiles }}}
-
-## main part {{{
-# generate `skyfov'
-SKYFOV="_skyfov.fits"
-printf "generate skyfov: \`${SKYFOV}' ...\n"
-punlearn skyfov
-skyfov infile="${EVT}" outfile="${SKYFOV}" clobber=yes
-
-# generate image
-# energy range: 500-7000 eV
-E_RANGE="500:7000"
-IMG="img_c`echo ${CHIP} | tr ':' '-'`_e`echo ${E_RANGE} | tr ':' '-'`.fits"
-printf "generate image: \`${IMG}' ...\n"
-punlearn dmcopy
-dmcopy infile="${EVT}[sky=region(${SKYFOV}[ccd_id=${CHIP}])][energy=${E_RANGE}][bin sky=::1]" outfile="${IMG}" clobber=yes
-
-# aconvolve
-IMG_ACONV="${IMG%.fits}_aconv.fits"
-KERNELSPEC="lib:gaus(2,5,1,10,10)"
-METHOD="fft"
-printf "\`aconvolve' to smooth img: \`${IMG_ACONV}' ...\n"
-printf "## aconvolve: kernelspec=\"${KERNELSPEC}\" method=\"${METHOD}\"\n"
-punlearn aconvolve
-aconvolve infile="${IMG}" outfile="${IMG_ACONV}" kernelspec="${KERNELSPEC}" method="${METHOD}" clobber=yes
-
-# dmstat
-printf "\`dmstat' to analyze the img ...\n"
-punlearn dmstat
-dmstat infile="${IMG_ACONV}"
-MAX_X=`pget dmstat out_max_loc | cut -d',' -f1`
-MAX_Y=`pget dmstat out_max_loc | cut -d',' -f2`
-# dmcoords to convert (x,y) to (ra,dec)
-printf "\`dmcoords' to convert (x,y) to (ra,dec) ...\n"
-punlearn dmcoords
-dmcoords infile="${EVT}" asolfile="${ASOL}" option=sky x=${MAX_X} y=${MAX_Y}
-MAX_RA=`pget dmcoords ra`
-MAX_DEC=`pget dmcoords dec`
-
-# output results
-PHY_REG="peak_phy.reg"
-WCS_REG="peak_wcs.reg"
-[ -e "${PHY_REG}" ] && mv -f ${PHY_REG} ${PHY_REG}_bak
-[ -e "${WCS_REG}" ] && mv -f ${WCS_REG} ${WCS_REG}_bak
-echo "point(${MAX_X},${MAX_Y})" > ${PHY_REG}
-echo "point(${MAX_RA},${MAX_DEC})" > ${WCS_REG}
-
-printf "\n"
-printf "++++++++++++++++++++++++++++++++++++++++++++\n"
-printf "X-ray peak coordinates:\n"
-printf "via dmstat:\n"
-printf "  (X,Y):      (${MAX_X},${MAX_Y})\n"
-printf "  (RA,DEC):   (${MAX_RA},${MAX_DEC})\n"
-
-## region file based {{{
-if [ -r "${REG}" ]; then
-    MAX_X2=`\grep -iE '(pie|annulus)' ${REG} | head -n 1 | tr -d 'a-zA-Z()' | awk -F',' '{ print $1 }'`
-    MAX_Y2=`\grep -iE '(pie|annulus)' ${REG} | head -n 1 | tr -d 'a-zA-Z()' | awk -F',' '{ print $2 }'`
-    punlearn dmcoords
-    dmcoords infile="${EVT}" asolfile="${ASOL}" option=sky x=${MAX_X2} y=${MAX_Y2}
-    MAX_RA2=`pget dmcoords ra`
-    MAX_DEC2=`pget dmcoords dec`
-    # calc offset
-    OFFSET=`echo "scale=5; sqrt((${MAX_X}-${MAX_X2})^2 + (${MAX_Y}-${MAX_Y2})^2)" | bc -l`
-
-    printf "via region:\n"
-    printf "  (X2,Y2):    (${MAX_X2},${MAX_Y2})\n"
-    printf "  (RA2,DEC2): (${MAX_RA2},${MAX_DEC2})\n"
-    printf "offset (unit pixel):\n"
-    printf "  offset:     ${OFFSET}\n"
-fi
-## region file }}}
-printf "++++++++++++++++++++++++++++++++++++++++++++\n"
-## main }}}
-
-exit 0
-