Remove make_infojson.sh

1 files changed, 0 insertions, 191 deletions

diff --git a/scripts/make_infojson.sh b/scripts/make_infojson.sh
deleted file mode 100755
index 85706c0..0000000
--- a/scripts/make_infojson.sh
+++ /dev/null
@@ -1,191 +0,0 @@
-#!/bin/sh
-#
-# This script is used to make a bare '_INFO.json' file
-# placed under directory 'repro/',
-# thus scripts 'ciao_calc_ct.sh' and 'ciao_calc_csb.sh'
-# can get required information from this file.
-#
-# Run this script in directory 'repro/'.
-#
-# Weitian LI <liweitianux@gmail.com>
-# 2014/06/24
-#
-#
-VERSION="v2.0"
-UPDATED="2015/06/03"
-#
-# ChangeLog:
-# v2.0, 2015/06/03, Aaron LI
-#   * Copy needed pfiles to tmp directory,
-#     set environment variable $PFILES to use these first.
-#     and remove them after usage.
-# v1.1, 2014/12/05, Weitian LI
-#   regex '\s+' not supported by old grep version, change to use '[[:space:]]+'
-#
-
-## usage, help {{{
-case "$1" in
-    -[hH]*|--[hH]*)
-        printf "usage:\n"
-        printf "    `basename $0` evtdir=<evt_dir> spcdir=<spc_dir> imgdir=<img_dir> massdir=<mass_dir> json=<info_json>\n"
-        printf "\nNOTE:\n"
-        printf "    run this script in dir 'repro/'\n"
-        printf "\nversion:\n"
-        printf "    ${VERSION}, ${UPDATED}\n"
-        exit 1
-        ;;
-esac
-## usage, help }}}
-
-## default parameters {{{
-# basedir: . (run this script under basedir)
-BASEDIR=`pwd -P`
-#
-## directory structure of wjy's data
-# default evtdir relative to 'basedir'
-DFT_EVTDIR="../evt2/evt"
-# default spcdir relative to 'basedir'
-DFT_SPCDIR="../evt2/spc/profile"
-# default imgdir relative to 'basedir'
-DFT_IMGDIR="../evt2/img"
-# default massdir relative to 'basedir'
-DFT_MASSDIR="../evt2/mass"
-## }}}
-
-## functions {{{
-# process commandline arguments
-# cmdline arg format: `KEY=VALUE'
-getopt_keyval() {
-    until [ -z "$1" ]
-    do
-        key=${1%%=*}                    # extract key
-        val=${1#*=}                     # extract value
-        keyval="${key}=\"${val}\""
-        echo "## getopt: eval '${keyval}'"
-        eval ${keyval}
-        shift                           # shift, process next one
-    done
-}
-## functions }}}
-
-## parameters {{{
-# process cmdline args using `getopt_keyval'
-getopt_keyval "$@"
-
-# evt dir
-if [ ! -z "${evtdir}" ] && [ -d "${BASEDIR}/${evtdir}" ]; then
-    EVT_DIR=`( cd ${BASEDIR}/${evtdir} && pwd -P )`
-elif [ -d "${BASEDIR}/${DFT_EVTDIR}" ]; then
-    EVT_DIR=`( cd ${BASEDIR}/${DFT_EVTDIR} && pwd -P )`
-else
-    read -p "> evt dir (relative to basedir): " EVT_DIR
-    if [ ! -d "${BASEDIR}/${EVT_DIR}" ]; then
-        printf "ERROR: given \`${EVT_DIR}' invalid\n"
-        exit 20
-    else
-        EVT_DIR="${BASEDIR}/${EVT_DIR}"
-    fi
-fi
-printf "## use evtdir: \`${EVT_DIR}'\n"
-
-# spc dir
-if [ ! -z "${spcdir}" ] && [ -d "${BASEDIR}/${spcdir}" ]; then
-    SPC_DIR=`( cd ${BASEDIR}/${spcdir} && pwd -P )`
-elif [ -d "${BASEDIR}/${DFT_SPCDIR}" ]; then
-    SPC_DIR=`( cd ${BASEDIR}/${DFT_SPCDIR} && pwd -P )`
-else
-    read -p "> spc dir (relative to basedir): " SPC_DIR
-    if [ ! -d "${BASEDIR}/${SPC_DIR}" ]; then
-        printf "ERROR: given \`${SPC_DIR}' invalid\n"
-        exit 21
-    else
-        SPC_DIR="${BASEDIR}/${SPC_DIR}"
-    fi
-fi
-printf "## use spcdir: \`${SPC_DIR}'\n"
-
-# img dir
-if [ ! -z "${imgdir}" ] && [ -d "${BASEDIR}/${imgdir}" ]; then
-    IMG_DIR=`( cd ${BASEDIR}/${imgdir} && pwd -P )`
-elif [ -d "${BASEDIR}/${DFT_IMGDIR}" ]; then
-    IMG_DIR=`( cd ${BASEDIR}/${DFT_IMGDIR} && pwd -P )`
-else
-    read -p "> img dir (relative to basedir): " IMG_DIR
-    if [ ! -d "${BASEDIR}/${IMG_DIR}" ]; then
-        printf "ERROR: given \`${IMG_DIR}' invalid\n"
-        exit 22
-    else
-        IMG_DIR="${BASEDIR}/${IMG_DIR}"
-    fi
-fi
-printf "## use imgdir: \`${IMG_DIR}'\n"
-
-# mass dir
-if [ ! -z "${massdir}" ] && [ -d "${BASEDIR}/${massdir}" ]; then
-    MASS_DIR=`( cd ${BASEDIR}/${massdir} && pwd -P )`
-elif [ -d "${BASEDIR}/${DFT_MASSDIR}" ]; then
-    MASS_DIR=`( cd ${BASEDIR}/${DFT_MASSDIR} && pwd -P )`
-else
-    read -p "> mass dir (relative to basedir): " MASS_DIR
-    if [ ! -d "${BASEDIR}/${MASS_DIR}" ]; then
-        printf "ERROR: given \`${MASS_DIR}' invalid\n"
-        exit 22
-    else
-        MASS_DIR="${BASEDIR}/${MASS_DIR}"
-    fi
-fi
-printf "## use massdir: \`${MASS_DIR}'\n"
-## }}}
-
-## prepare parameter files (pfiles) {{{
-CIAO_TOOLS="dmkeypar"
-
-PFILES_TMPDIR="/tmp/pfiles-$$"
-[ -d "${PFILES_TMPDIR}" ] && rm -rf ${PFILES_TMPDIR} || mkdir ${PFILES_TMPDIR}
-
-# Copy necessary pfiles for localized usage
-for tool in ${CIAO_TOOLS}; do
-    pfile=`paccess ${tool}`
-    punlearn ${tool} && cp -Lvf ${pfile} ${PFILES_TMPDIR}/
-done
-
-# Modify environment variable 'PFILES' to use local pfiles first
-export PFILES="${PFILES_TMPDIR}:${PFILES}"
-## pfiles }}}
-
-# set files
-EVT2_CLEAN=`readlink -f ${EVT_DIR}/evt2*_clean*.fits | head -n 1`
-MASS_SBP_CFG=`readlink -f ${MASS_DIR}/source.cfg`
-MASS_RES=`readlink -f ${MASS_DIR}/final_result*.txt`
-SPC_CFG=`readlink -f ${IMG_DIR}/spc_fit.cfg`
-
-# get needed data
-punlearn dmkeypar
-OBSID=`dmkeypar "${EVT2_CLEAN}" OBS_ID echo=yes`
-NAME=`dmkeypar "${EVT2_CLEAN}" OBJECT echo=yes`
-Z=`grep -E '^z[[:space:]]+' ${MASS_SBP_CFG} | awk '{ print $2 }'`
-NH=`grep -E '^nh[[:space:]]+' ${SPC_CFG} | awk '{ print $2 }'`
-R500=`grep -E '^r500=' ${MASS_RES} | awk '{ print $2 }'`
-
-# generate info json file
-if [ ! -z "${json}" ]; then
-    JSON_FILE="${json}"
-else
-    JSON_FILE="oi${OBSID}_INFO.json"
-fi
-printf "## info json_filename: \`${JSON_FILE}'\n"
-
-cat > ${JSON_FILE} << _EOF_
-{
-    "Obs. ID": ${OBSID},
-    "Source Name": "${NAME}",
-    "nH (10^22 cm^-2)": ${NH},
-    "redshift": ${Z},
-    "R500 (kpc)": ${R500},
-    "Comment": "Bare info json file created by `basename $0`"
-},
-_EOF_
-
-# clean pfiles
-rm -rf ${PFILES_TMPDIR}
-