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| -rwxr-xr-x | scripts/ciao_procevt.sh | 206 |
1 files changed, 0 insertions, 206 deletions
diff --git a/scripts/ciao_procevt.sh b/scripts/ciao_procevt.sh deleted file mode 100755 index 5ee8abd..0000000 --- a/scripts/ciao_procevt.sh +++ /dev/null @@ -1,206 +0,0 @@ -#!/bin/sh -# -unalias -a -export LC_COLLATE=C -########################################################### -## process `evt2 file' generated by `chandra_repro' ## -## to produce a `clean evt2 file' ## -## (remove point source and flares) ## -## for later image and spectral analysis ## -## ## -## NOTES: ## -## based on previous `ciao_process_evt2.sh' ## -## support ACIS-I(chip: 0-3) and ACIS-S(chip: 7) ## -## determine by check `DETNAM' for chip number ## -## if `DETNAM' has `0123', then `ACIS-I' ## -## if `DETNAM' has `7', then `ACIS-S' ## -## ## -## Weitian LI <liweitianux@gmail.com># ## -## 2012/08/16 ## -########################################################### -## -VERSION="v3.1" -UPDATED="2017-02-06" -## -## ChangeLogs: -## v3.1, 2017-02-06, Weitian LI -## * Specify regions format and system for ds9 -## v3.0, 2015/06/02, Aaron LI -## * Added 'unalias -a' and 'export LC_COLLATE=C' -## * Replaced 'grep' with '\grep', 'ls' with '\ls' -## * Copy needed pfiles to current working directory, and -## set environment variable $PFILES to use these first. -## v2.2, 2014/10/30, Weitian LI -## small fix to the generation of chips script: -## changed '>>' to '>' -## v2.1, 2012/08/16, Weitian LI -## improve invoke `chips', run it in a separate terminal -## - - -## error code {{{ -ERR_USG=1 -ERR_DIR=11 -ERR_EVT=12 -ERR_BKG=13 -ERR_REG=14 -ERR_ASOL=21 -ERR_BPIX=22 -ERR_PBK=23 -ERR_MSK=24 -ERR_BKGTY=31 -ERR_SPEC=32 -ERR_DET=41 -## error code }}} - -## usage, help {{{ -case "$1" in - -[hH]*|--[hH]*) - printf "usage:\n" - printf " `basename $0` evt=<raw_evt_file>\n" - printf "\nversion:\n" - printf " ${VERSION}, ${UPDATED}\n" - exit ${ERR_USG} - ;; -esac -## usage, help }}} - -## default parameters {{{ -# default `event file' which used to match `blanksky' files -#DFT_EVT="_NOT_EXIST_" -DFT_EVT="`\ls acisf?????*_repro_evt2.fits 2> /dev/null`" -## default parameters }}} - -## functions {{{ -# process commandline arguments -# cmdline arg format: `KEY=VALUE' -getopt_keyval() { - until [ -z "$1" ] - do - key=${1%%=*} # extract key - val=${1#*=} # extract value - keyval="${key}=\"${val}\"" - echo "## getopt: eval '${keyval}'" - eval ${keyval} - shift # shift, process next one - done -} -## functions }}} - -## parameters {{{ -# process cmdline args using `getopt_keyval' -getopt_keyval "$@" - -# check given parameters -# check evt file -if [ -r "${evt}" ]; then - EVT=${evt} -elif [ -r "${DFT_EVT}" ]; then - EVT=${DFT_EVT} -else - read -p "evt2 file: " EVT - if ! [ -r "${EVT}" ]; then - printf "ERROR: cannot access given \`${EVT}' evt file\n" - exit ${ERR_EVT} - fi -fi -printf "## use evt file: \`${EVT}'\n" -## parameters }}} - -## prepare parameter files (pfiles) {{{ -CIAO_TOOLS="dmkeypar dmcopy celldetect dmextract" - -# Copy necessary pfiles for localized usage -for tool in ${CIAO_TOOLS}; do - pfile=`paccess ${tool}` - [ -n "${pfile}" ] && punlearn ${tool} && cp -Lvf ${pfile} . -done - -# Modify environment variable 'PFILES' to use local pfiles first -export PFILES="./:${PFILES}" -## pfiles }}} - -## determine ACIS type {{{ -punlearn dmkeypar -DETNAM=`dmkeypar ${EVT} DETNAM echo=yes` -if echo ${DETNAM} | \grep -q 'ACIS-0123'; then - printf "## \`DETNAM' (${DETNAM}) has chips 0123\n" - printf "## ACIS-I\n" - ACIS_TYPE="ACIS-I" - CCD="0:3" - ROOTNAME="evt2_c`echo ${CCD} | tr ':' '-'`" -elif echo ${DETNAM} | \grep -q 'ACIS-[0-6]*7'; then - printf "## \`DETNAM' (${DETNAM}) has chip 7\n" - printf "## ACIS-S\n" - ACIS_TYPE="ACIS-S" - CCD="7" - ROOTNAME="evt2_c${CCD}" -else - printf "ERROR: unknown detector type: ${DETNAM}\n" - exit ${ERR_DET} -fi -## ACIS type }}} - -## main process {{{ -printf "filter raw evt2 file by ccd_id ...\n" -EVT2_ORIG="${ROOTNAME}_orig.fits" -punlearn dmcopy -dmcopy infile="${EVT}[ccd_id=${CCD}]" outfile=${EVT2_ORIG} clobber=yes - -# detect point sources -printf "using \`celldetect' to find the point sources ...\n" -CELLD="celld_${ROOTNAME}" -[ -e "${CELLD}.reg" ] && mv -fv ${CELLD}.reg ${CELLD}.reg_bak -punlearn celldetect -celldetect infile=${EVT2_ORIG} outfile="${CELLD}.fits" \ - regfile="${CELLD}.reg" clobber=yes - -printf "check the result of \`celldetect' ...\n" -printf "modify if necessary and save as the same name, \`${CELLD}.reg'\n" -cp -fv ${CELLD}.reg ${CELLD}_orig.reg -ds9 ${EVT2_ORIG} -regions format ciao \ - -regions system physical \ - -regions ${CELLD}.reg \ - -cmap he -bin factor 2 - -EVT2_RMSRCS="${ROOTNAME}_rmsrcs.fits" -punlearn dmcopy -dmcopy infile="${EVT2_ORIG}[exclude sky=region(${CELLD}.reg)]" \ - outfile=${EVT2_RMSRCS} clobber=yes - -LC_REG="ex_bkg.reg" -printf "filter flares ...\n" -printf "select a big source region and save as \`${LC_REG}'\n" -touch ${LC_REG} -ds9 ${EVT2_RMSRCS} -cmap he -bin factor 2 - -printf "create the lightcurve ...\n" -LC="${LC_REG%.reg}.lc" -[ -e "${LC}" ] && mv -fv ${LC} ${LC}_bak -punlearn dmextract -dmextract infile="${EVT2_RMSRCS}[exclude sky=region(${LC_REG})][bin time=::200]" \ - outfile="${LC}" opt=ltc1 clobber=yes - -# generate a script for `chips' -# for convenience and backup -LC_SCRIPT="_${LC%.lc}.chips" -LC_SCALE=1.2 -GTI="${LC%.lc}.gti" -cat > ${LC_SCRIPT} << _EOF_ -from lightcurves import * -lc_clean("${LC}") -lc_clean("${LC}", scale=${LC_SCALE}, outfile="${GTI}") -print_window("${LC%.lc}_lc.jpg", ["format", "jpg", "clobber", "True"]) -_EOF_ - -printf "generate GTI ...\n" -# [-x] let chips run in a separate terminal -chips -x ${LC_SCRIPT} - -printf "remove the background flare ...\n" -EVT2_CLEAN="${ROOTNAME}_clean.fits" -punlearn dmcopy -dmcopy infile="${EVT2_RMSRCS}[@${GTI}]" outfile=${EVT2_CLEAN} clobber=yes -## main process }}} - -printf "FINISHED\n" |