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Diffstat (limited to 'mass_profile/fit_mass.sh')
| -rwxr-xr-x | mass_profile/fit_mass.sh | 240 |
1 files changed, 0 insertions, 240 deletions
diff --git a/mass_profile/fit_mass.sh b/mass_profile/fit_mass.sh deleted file mode 100755 index f349f24..0000000 --- a/mass_profile/fit_mass.sh +++ /dev/null @@ -1,240 +0,0 @@ -#!/bin/sh -# -# Front-end script used to calculate the mass and related values. -# -# Output: -# * final_result.txt / center_only_results.txt -# * beta_param.txt / dbeta_param_center.txt -# * gas_mass_int_center.qdp -# * mass_int_center.qdp -# * nfw_fit_center.qdp -# * nfw_param_center.txt -# * overdensity_center.qdp -# * rho_fit_center.dat -# * rho_fit_center.qdp -# * sbp_fit_center.qdp -# * entropy_center.qdp -# * wang2012_param_center.txt -# * tprofile_dump_center.qdp -# * tprofile_fit_center.qdp -# * summary_mass_profile.qdp -# * summary_overdensity.qdp -# * summary_gas_mass_profile.qdp -# * summary_entropy.qdp -# -# Junhua Gu -# Weitian LI -# 2016-06-07 -# - -if [ $# -eq 1 ] || [ $# -eq 2 ]; then - : -else - echo "usage:" - echo " `basename $0` <mass.conf> [c]" - echo "" - echo "arguments:" - echo " <mass.conf>: config file for mass profile calculation" - echo " [c]: optional; if specified, do not calculate the errors" - exit 1 -fi - -if ! which xspec > /dev/null 2>&1; then - printf "*** ERROR: please initialize HEASOFT first\n" - exit 2 -fi - -export PATH="/usr/local/bin:/usr/bin:/bin:$PATH" - -base_path=$(dirname $(realpath $0)) -printf "## base_path: \`${base_path}'\n" -mass_cfg="$1" -printf "## use configuration file: \`${mass_cfg}'\n" -case "$2" in - [cC]) - F_C="YES" - ;; - *) - F_C="NO" - ;; -esac - -nh=`grep '^nh' ${mass_cfg} | awk '{ print $2 }'` -abund=`grep '^abund' ${mass_cfg} | awk '{ print $2 }'` -nfw_rmin_kpc=`grep '^nfw_rmin_kpc' ${mass_cfg} | awk '{ print $2 }'` -tprofile_data=`grep '^tprofile_data' ${mass_cfg} | awk '{ print $2 }'` -tprofile_cfg=`grep '^tprofile_cfg' ${mass_cfg} | awk '{ print $2 }'` -sbp_cfg=`grep '^sbp_cfg' ${mass_cfg} | awk '{ print $2 }'` - -# sbp config file -sbp_data=`grep '^sbp_data' ${sbp_cfg} | awk '{ print $2 }'` -tprofile=`grep '^tprofile' ${sbp_cfg} | awk '{ print $2 }'` -cfunc_profile=`grep '^cfunc_profile' ${sbp_cfg} | awk '{ print $2 }'` -z=`grep '^z' ${sbp_cfg} | awk '{ print $2 }'` -cm_per_pixel=`cosmo_calc ${z} | grep 'cm/pixel' | awk -F':' '{ print $2 }'` -sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel ${cm_per_pixel}/" ${sbp_cfg} - -if grep -q '^beta2' $sbp_cfg; then - MODEL="dbeta" - MODEL_NAME="double-beta" -else - MODEL="beta" - MODEL_NAME="single-beta" -fi - -PROG_TPROFILE="fit_wang2012_model" -tprofile_dump="wang2012_dump.qdp" -tprofile_param_center="wang2012_param_center.txt" -tprofile_fit_center="tprofile_fit_center.qdp" -tprofile_center="tprofile_dump_center.qdp" - -${base_path}/${PROG_TPROFILE} ${tprofile_data} ${tprofile_cfg} \ - ${cm_per_pixel} 2> /dev/null | tee ${tprofile_param_center} -cp -fv ${tprofile_dump} ${tprofile} -mv -fv ${tprofile_dump} ${tprofile_center} -mv -fv fit_result.qdp ${tprofile_fit_center} - -${base_path}/calc_coolfunc.sh ${tprofile_center} \ - ${abund} ${nh} ${z} ${cfunc_profile} -cfunc_profile_center="coolfunc_profile_center.txt" -cp -f ${cfunc_profile} ${cfunc_profile_center} - -PROG_SBPFIT="fit_${MODEL}_sbp" -RES_SBPFIT="${MODEL}_param.txt" -RES_SBPFIT_CENTER="${MODEL}_param_center.txt" -${base_path}/${PROG_SBPFIT} ${sbp_cfg} 2> /dev/null -mv -fv ${RES_SBPFIT} ${RES_SBPFIT_CENTER} -cat ${RES_SBPFIT_CENTER} -mv -fv sbp_fit.qdp sbp_fit_center.qdp -mv -fv rho_fit.qdp rho_fit_center.qdp -mv -fv rho_fit.dat rho_fit_center.dat -mv -fv entropy.qdp entropy_center.qdp -${base_path}/fit_nfw_mass mass_int.dat ${z} ${nfw_rmin_kpc} 2> /dev/null -mv -fv nfw_param.txt nfw_param_center.txt -mv -fv nfw_fit_result.qdp nfw_fit_center.qdp -mv -fv nfw_dump.qdp mass_int_center.qdp -mv -fv overdensity.qdp overdensity_center.qdp -mv -fv gas_mass_int.qdp gas_mass_int_center.qdp - -## only calculate central value {{{ -if [ "${F_C}" = "YES" ]; then - RES_CENTER="center_only_results.txt" - [ -e "${RES_CENTER}" ] && mv -f ${RES_CENTER} ${RES_CENTER}_bak - ${base_path}/analyze_mass_profile.py 200 c | tee -a ${RES_CENTER} - ${base_path}/analyze_mass_profile.py 500 c | tee -a ${RES_CENTER} - ${base_path}/analyze_mass_profile.py 1500 c | tee -a ${RES_CENTER} - ${base_path}/analyze_mass_profile.py 2500 c | tee -a ${RES_CENTER} - ${base_path}/fg_2500_500.py c | tee -a ${RES_CENTER} - exit 0 -fi -## central value }}} - -## ------------------------------------------------------------------ - -# clean previous files -rm -f summary_overdensity.qdp -rm -f summary_mass_profile.qdp -rm -f summary_gas_mass_profile.qdp -rm -f summary_entropy.qdp - -# Estimate the errors of Lx and Fx by Monte Carlo simulation -printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n" -MC_TIMES=100 -for i in `seq 1 ${MC_TIMES}`; do - ${base_path}/shuffle_profile.py ${tprofile_data} tmp_tprofile.txt - ${base_path}/shuffle_profile.py ${sbp_data} tmp_sbprofile.txt - - # temperature profile - ${base_path}/${PROG_TPROFILE} tmp_tprofile.txt ${tprofile_cfg} \ - ${cm_per_pixel} 2> /dev/null - mv -f ${tprofile_dump} ${tprofile} - - TMP_SBP_CFG="tmp_sbp.cfg" - [ -e "${TMP_SBP_CFG}" ] && rm -f ${TMP_SBP_CFG} - cat ${sbp_cfg} | while read l; do - if echo "${l}" | grep -q '^sbp_data' >/dev/null; then - echo "sbp_data tmp_sbprofile.txt" >> ${TMP_SBP_CFG} - elif echo "${l}" | grep -q '^tprofile' >/dev/null; then - echo "tprofile ${tprofile}" >> ${TMP_SBP_CFG} - else - echo "${l}" >> ${TMP_SBP_CFG} - fi - done - - printf "## ${i} / ${MC_TIMES} ##\n" - printf "## `pwd -P` ##\n" - ${base_path}/calc_coolfunc.sh ${tprofile} ${abund} ${nh} ${z} ${cfunc_profile} - ${base_path}/${PROG_SBPFIT} ${TMP_SBP_CFG} 2> /dev/null - cat ${RES_SBPFIT} - ${base_path}/fit_nfw_mass mass_int.dat ${z} ${nfw_rmin_kpc} 2> /dev/null - cat nfw_dump.qdp >> summary_mass_profile.qdp - echo "no no no" >> summary_mass_profile.qdp - cat overdensity.qdp >> summary_overdensity.qdp - echo "no no no" >> summary_overdensity.qdp - cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp - echo "no no no" >> summary_gas_mass_profile.qdp - cat entropy.qdp >> summary_entropy.qdp - echo "no no no" >> summary_entropy.qdp -done # end of `for' - -# recover the files of original center values -cp -f ${cfunc_profile_center} ${cfunc_profile} -cp -f ${tprofile_center} ${tprofile} -printf "\n+++++++++++++++++ MONTE CARLO END +++++++++++++++++++\n" - -## analyze results -RES_TMP="_tmp_result_mrl.txt" -RES_FINAL="final_result.txt" -[ -e "${RES_TMP}" ] && mv -fv ${RES_TMP} ${RES_TMP}_bak -[ -e "${RES_FINAL}" ] && mv -fv ${RES_FINAL} ${RES_FINAL}_bak - -${base_path}/analyze_mass_profile.py 200 | tee -a ${RES_TMP} -${base_path}/analyze_mass_profile.py 500 | tee -a ${RES_TMP} -${base_path}/analyze_mass_profile.py 1500 | tee -a ${RES_TMP} -${base_path}/analyze_mass_profile.py 2500 | tee -a ${RES_TMP} - -R200_VAL=`grep '^r200' ${RES_TMP} | awk '{ print $2 }'` -R500_VAL=`grep '^r500' ${RES_TMP} | awk '{ print $2 }'` -R1500_VAL=`grep '^r1500' ${RES_TMP} | awk '{ print $2 }'` -R2500_VAL=`grep '^r2500' ${RES_TMP} | awk '{ print $2 }'` - -R200E=`grep '^r200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -R500E=`grep '^r500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -R1500E=`grep '^r1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -R2500E=`grep '^r2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M200E=`grep '^m200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M500E=`grep '^m500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M1500E=`grep '^m1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -M2500E=`grep '^m2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG200E=`grep '^gas_m200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG500E=`grep '^gas_m500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG1500E=`grep '^gas_m1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -MG2500E=`grep '^gas_m2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG200E=`grep '^gas_fraction200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG500E=`grep '^gas_fraction500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG1500E=`grep '^gas_fraction1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` -FG2500E=`grep '^gas_fraction2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'` - -printf "\n+++++++++++++++ RESULTS (${MODEL_NAME}) +++++++++++++++\n" -printf "model: ${MODEL_NAME}\n" | tee -a ${RES_FINAL} -cat ${RES_SBPFIT_CENTER} | tee -a ${RES_FINAL} -printf "\n" | tee -a ${RES_FINAL} -printf "r200= ${R200E} kpc\n" | tee -a ${RES_FINAL} -printf "m200= ${M200E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_m200= ${MG200E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_fraction200= ${FG200E} x100%%\n" | tee -a ${RES_FINAL} -printf "r500= ${R500E} kpc\n" | tee -a ${RES_FINAL} -printf "m500= ${M500E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_m500= ${MG500E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_fraction500= ${FG500E} x100%%\n" | tee -a ${RES_FINAL} -printf "r1500= ${R1500E} kpc\n" | tee -a ${RES_FINAL} -printf "m1500= ${M1500E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_m1500= ${MG1500E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_fraction1500= ${FG1500E} x100%%\n" | tee -a ${RES_FINAL} -printf "r2500= ${R2500E} kpc\n" | tee -a ${RES_FINAL} -printf "m2500= ${M2500E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_m2500= ${MG2500E} Msun\n" | tee -a ${RES_FINAL} -printf "gas_fraction2500= ${FG2500E} x100%%\n" | tee -a ${RES_FINAL} -printf "\n" | tee -a ${RES_FINAL} -${base_path}/fg_2500_500.py | tee -a ${RES_FINAL} -printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n" |