diff options
Diffstat (limited to 'scripts')
| -rwxr-xr-x | scripts/ciao_genregs.sh | 307 |
1 files changed, 0 insertions, 307 deletions
diff --git a/scripts/ciao_genregs.sh b/scripts/ciao_genregs.sh deleted file mode 100755 index 7ab3f41..0000000 --- a/scripts/ciao_genregs.sh +++ /dev/null @@ -1,307 +0,0 @@ -#!/bin/sh -## -## Generate regions for 'radial spectra analysis' (rspec.reg), -## and regions for 'surface brightness profile' extraction. -## -## Author: Weitian LI -## Created: 2013/10/12 -## -VERSION="v2.1" -UPDATED="2017-02-06" -## -## Changelogs: -## v2.1, 2017-02-06, Weitian LI -## * Specify regions format and system for ds9 -## v2.0, 2015/06/03, Aaron LI -## * Updated script description -## * Replaced 'grep' with '\grep', 'ls' with '\ls' -## * ds9 colormap changed from 'sls' to 'he' -## * Copy needed pfiles to current working directory, and -## set environment variable $PFILES to use these first. -## v1.0, 2013/10/12, Weitian LI -## split from 'ciao_expcorr_sbp_v3.sh' -## - -unalias -a -export LC_COLLATE=C - -SCRIPT_PATH=`readlink -f $0` -SCRIPT_DIR=`dirname ${SCRIPT_PATH}` -XCENTROID_SCRIPT="chandra_xcentroid.sh" -GEN_SPCREG_SCRIPT="chandra_genspcreg.sh" -GEN_SBPREG_SCRIPT="chandra_gensbpreg.sh" - -## err code {{{ -ERR_USG=1 -ERR_DIR=11 -ERR_EVT=12 -ERR_BKG=13 -ERR_REG=14 -ERR_ASOL=21 -ERR_BPIX=22 -ERR_PBK=23 -ERR_MSK=24 -ERR_BKGTY=31 -ERR_SPEC=32 -ERR_DET=41 -ERR_ENG=42 -ERR_CIAO=100 -## error code }}} - -## usage {{{ -case "$1" in - -[hH]*|--[hH]*) - printf "usage:\n" - printf " `basename $0` evt=<evt2_clean> reg_in=<reg_in> bkgd=<bkgd_spec> ds9=<Yes|no>\n" - printf "\nversion:\n" - printf " ${VERSION}, ${UPDATED}\n" - exit ${ERR_USG} - ;; -esac -## usage }}} - -## link needed files {{{ -BKGD_FILE=`\ls ../bkg/bkgcorr_bl*.pi 2> /dev/null | head -n 1` -if [ -r "${BKGD_FILE}" ]; then - ln -svf ${BKGD_FILE} . -fi -ASOL_FILE=`\ls ../pcad*_asol?.fits 2> /dev/null` -if [ -r "${ASOL_FILE}" ]; then - ln -svf ${ASOL_FILE} . -fi -CELL_REG_FILE=`\ls ../evt/celld*.reg 2> /dev/null | \grep -v 'orig'` -if [ -r "${CELL_REG_FILE}" ]; then - ln -svf ${CELL_REG_FILE} . -fi -# }}} - -## default parameters {{{ -## clean evt2 file -DFT_EVT=`\ls evt2*_clean.fits 2> /dev/null` -## the repro dir -DFT_BASEDIR=".." -# default `asol file' -ASOL="`\ls pcadf*_asol1.fits 2> /dev/null | head -n 1`" - -## energy range -# format: `E_START:E_END:E_WIDTH' -DFT_ENERGY=700:7000:100 -E_START=`echo ${DFT_ENERGY} | awk -F':' '{ print $1 }'` -E_END=`echo ${DFT_ENERGY} | awk -F':' '{ print $2 }'` - -## log file -DFT_LOGFILE="genreg_`date '+%Y%m%d'`.log" - -## background spectra -DFT_BKGD=`\ls bkgcorr_bl*.pi | head -n 1` -## default parameters }}} - -## functions {{{ -getopt_keyval() { - until [ -z "$1" ] - do - key=${1%%=*} # extract key - val=${1#*=} # extract value - keyval="${key}=\"${val}\"" - echo "## getopt: eval '${keyval}'" - eval ${keyval} - shift # shift, process next one - done -} -## functions }}} - -## check ciao init and set path to solve conflit with heasoft {{{ -if [ -z "${ASCDS_INSTALL}" ]; then - printf "ERROR: CIAO NOT initialized\n" - exit ${ERR_CIAO} -fi - -## XXX: heasoft's `pget' etc. tools conflict with some CIAO tools -printf "set \$PATH to avoid conflicts between HEAsoft and CIAO\n" -export PATH="${ASCDS_BIN}:${ASCDS_CONTRIB}:${PATH}" -printf "## PATH: ${PATH}\n" -## check ciao&heasoft}}} - -## parameters {{{ -getopt_keyval "$@" - -##log file -LOGFILE="not_exist" - -##check evt file - -if [ -r "${evt}" ]; then - EVT=${evt} -elif [ -r "${DFT_EVT}" ]; then - EVT=${DFT_EVT} -else - read -p "clean evt2 file: " EVT - if [ ! -r "${EVT}" ]; then - printf "ERROR: cannot access given \`${EVT}' evt file\n" - exit ${ERR_EVT} - fi -fi - -##check ori sbp region -if [ -r "${reg_in}" ]; then - REG_IN="${reg_in}" -else - read -p "input region file: " REG_IN - if [ ! -r "${REG_IN}" ]; then - printf "ERROR: cannot access given \`${REG_IN}' evt file\n" - exit ${ERR_REG} - fi -fi - -# check give basedir -if [ -d "${basedir}" ]; then - BASEDIR=${basedir} -elif [ -d "${DFT_BASEDIR}" ]; then - BASEDIR=${DFT_BASEDIR} -else - read -p "> basedir (contains asol files): " BASEDIR - if [ ! -d "${BASEDIR}" ]; then - printf "ERROR: given \`${BASEDIR}' NOT a directory\n" - exit ${ERR_DIR} - fi -fi -# remove the trailing '/' -BASEDIR=`echo ${BASEDIR} | sed 's/\/*$//'` - -#background spectrum -if [ -r "${bkgd}" ] ;then - BKGD=${bkgd} -elif [ -r "${DFT_BKGD}" ] ; then - BKGD="${DFT_BKGD}" - #ln -svf ${DFT_BKGD} . -else - read -p ">background spectrum file: " BKGD - if [ ! -d ${BKGD} ] ; then - printf "ERROR on background spectrum file" - exit ${ERR_BKG} - fi -fi - -## ds9: flag to determine whether to use ds9 check centroid and regions -if [ ! -z "${ds9}" ]; then - case "${ds9}" in - [nN][oO]|[fF]*) - F_DS9="NO" - ;; - *) - F_DS9="YES" - ;; - esac -else - F_DS9="YES" -fi -## parameters }}} - -## prepare parameter files (pfiles) {{{ -CIAO_TOOLS="dmkeypar dmcopy dmcoords" - -# Copy necessary pfiles for localized usage -for tool in ${CIAO_TOOLS}; do - pfile=`paccess ${tool}` - [ -n "${pfile}" ] && punlearn ${tool} && cp -Lvf ${pfile} . -done - -# Modify environment variable 'PFILES' to use local pfiles first -export PFILES="./:${PFILES}" -## pfiles }}} - -## determine ACIS type {{{ -# consistent with `ciao_procevt' -punlearn dmkeypar -DETNAM=`dmkeypar ${EVT} DETNAM echo=yes` -if echo ${DETNAM} | \grep -q 'ACIS-0123'; then - printf "## \`DETNAM' (${DETNAM}) has chips 0123\n" - printf "## ACIS-I\n" - ACIS_TYPE="ACIS-I" - CCD="0:3" - NEW_DETNAM="ACIS-0123" - ROOTNAME="c0-3_e${E_START}-${E_END}" -elif echo ${DETNAM} | \grep -q 'ACIS-[0-6]*7'; then - printf "## \`DETNAM' (${DETNAM}) has chip 7\n" - printf "## ACIS-S\n" - ACIS_TYPE="ACIS-S" - CCD="7" - NEW_DETNAM="ACIS-7" - ROOTNAME="c7_e${E_START}-${E_END}" -else - printf "ERROR: unknown detector type: ${DETNAM}\n" - exit ${ERR_DET} -fi -## ACIS type }}} - -## filter by energy band -printf "filter out events in energy band: \`${E_START}:${E_END}' ...\n" -EVT_E="evt2_${ROOTNAME}.fits" -if [ ! -r "${EVT_E}" ]; then - punlearn dmcopy - dmcopy infile="${EVT}[energy=${E_START}:${E_END}]" outfile="${EVT_E}" clobber=yes -fi - -printf "======== X-RAY CENTROID =======\n" -CMD="${SCRIPT_DIR}/${XCENTROID_SCRIPT} evt=${EVT} reg=${REG_IN} conv=yes 2>&1 | tee xcentroid.dat" -printf "CMD: $CMD\n" -${SCRIPT_DIR}/${XCENTROID_SCRIPT} evt=${EVT} reg=${REG_IN} conv=yes 2>&1 | tee xcentroid.dat -X=`\grep '(X,Y)' xcentroid.dat | tr -d ' XY():' | awk -F',' '{ print $2 }'` -Y=`\grep '(X,Y)' xcentroid.dat | tr -d ' XY():' | awk -F',' '{ print $3 }'` -CNTRD_WCS_REG="centroid_wcs.reg" -CNTRD_PHY_REG="centroid_phy.reg" -printf "## X centroid: ($X,$Y)\n" -if [ "${F_DS9}" = "YES" ]; then - printf "check the X centroid ...\n" - ds9 ${EVT_E} -regions format ciao \ - -regions system physical \ - -regions ${CNTRD_PHY_REG} \ - -cmap he -bin factor 4 -fi -X0=$X -Y0=$Y -X=`\grep -i 'point' ${CNTRD_PHY_REG} | head -n 1 | tr -d 'a-zA-Z() ' | awk -F',' '{ print $1 }'` -Y=`\grep -i 'point' ${CNTRD_PHY_REG} | head -n 1 | tr -d 'a-zA-Z() ' | awk -F',' '{ print $2 }'` -if [ "x${X}" != "x${X0}" ] || [ "x${Y}" != "x${Y0}" ]; then - printf "## X CENTROID CHANGED -> ($X,$Y)\n" - # update ${CNTRD_WCS_REG} - printf "update ${CNTRD_WCS_REG} ...\n" - rm -f ${CNTRD_WCS_REG} - punlearn dmcoords - dmcoords infile="${EVT}" asolfile="${ASOL}" option=sky x=${X} y=${Y} - RA=`pget dmcoords ra` - DEC=`pget dmcoords dec` - echo "point(${RA},${DEC})" > ${CNTRD_WCS_REG} -fi -printf "======== X-RAY CENTROID FINISHED =======\n\n" - -SPC_REG=rspec.reg -SBP_REG=sbprofile.reg - -printf "======== GENERATE SBPROFILE REGIONS =======\n" -CMD="${SCRIPT_DIR}/${GEN_SBPREG_SCRIPT} ${EVT} ${EVT_E} ${X} ${Y} ${BKGD} ${SBP_REG}" -printf "CMD: ${CMD}\n" -${SCRIPT_DIR}/${GEN_SBPREG_SCRIPT} ${EVT} ${EVT_E} ${X} ${Y} ${BKGD} ${SBP_REG} -if [ "${F_DS9}" = "YES" ]; then - printf "check SBP regions ...\n" - ds9 ${EVT_E} -regions format ciao \ - -regions system physical \ - -regions ${SBP_REG} \ - -cmap he -bin factor 4 -fi -printf "======== GENERATE SBPROFILE REGIONS FINISHED =======\n\n" - -printf "======== GENERATE SPECTRUM REGIONS =======\n" -CMD="${SCRIPT_DIR}/${GEN_SPCREG_SCRIPT} ${EVT} ${EVT_E} ${BKGD} ${X} ${Y} ${SPC_REG}" -printf "CMD: ${CMD}\n" -${SCRIPT_DIR}/${GEN_SPCREG_SCRIPT} ${EVT} ${EVT_E} ${BKGD} ${X} ${Y} ${SPC_REG} -if [ "${F_DS9}" = "YES" ]; then - printf "check SPC regions ...\n" - ds9 ${EVT_E} -regions format ciao \ - -regions system physical \ - -regions ${SPC_REG} \ - -cmap he -bin factor 4 -fi -printf "======== GENERATE SPECTRUM REGIONS FINISHED =======\n\n" - -exit 0 |