1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
|
#!/bin/sh
#
# Front-end script used to calculate the mass and related values.
#
# Output:
# * final_result.txt / center_only_results.txt
# * beta_param.txt / dbeta_param_center.txt
# * gas_mass_int_center.qdp
# * mass_int_center.qdp
# * nfw_fit_center.qdp
# * nfw_param_center.txt
# * overdensity_center.qdp
# * rho_fit_center.dat
# * rho_fit_center.qdp
# * sbp_fit_center.qdp
# * entropy_center.qdp
# * wang2012_param_center.txt
# * tprofile_dump_center.qdp
# * tprofile_fit_center.qdp
# * summary_mass_profile.qdp
# * summary_overdensity.qdp
# * summary_gas_mass_profile.qdp
# * summary_entropy.qdp
#
# Junhua Gu
# Weitian LI
# 2016-06-07
#
if [ $# -eq 1 ] || [ $# -eq 2 ]; then
:
else
echo "usage:"
echo " `basename $0` <mass.conf> [c]"
echo ""
echo "arguments:"
echo " <mass.conf>: config file for mass profile calculation"
echo " [c]: optional; if specified, do not calculate the errors"
exit 1
fi
if ! which xspec > /dev/null 2>&1; then
printf "*** ERROR: please initialize HEASOFT first\n"
exit 2
fi
export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
base_path=$(dirname $(realpath $0))
printf "## base_path: \`${base_path}'\n"
mass_cfg="$1"
printf "## use configuration file: \`${mass_cfg}'\n"
case "$2" in
[cC])
F_C="YES"
;;
*)
F_C="NO"
;;
esac
nh=`grep '^nh' ${mass_cfg} | awk '{ print $2 }'`
abund=`grep '^abund' ${mass_cfg} | awk '{ print $2 }'`
nfw_rmin_kpc=`grep '^nfw_rmin_kpc' ${mass_cfg} | awk '{ print $2 }'`
tprofile_data=`grep '^tprofile_data' ${mass_cfg} | awk '{ print $2 }'`
tprofile_cfg=`grep '^tprofile_cfg' ${mass_cfg} | awk '{ print $2 }'`
sbp_cfg=`grep '^sbp_cfg' ${mass_cfg} | awk '{ print $2 }'`
# sbp config file
sbp_data=`grep '^sbp_data' ${sbp_cfg} | awk '{ print $2 }'`
tprofile=`grep '^tprofile' ${sbp_cfg} | awk '{ print $2 }'`
cfunc_profile=`grep '^cfunc_profile' ${sbp_cfg} | awk '{ print $2 }'`
z=`grep '^z' ${sbp_cfg} | awk '{ print $2 }'`
cm_per_pixel=`cosmo_calc ${z} | grep 'cm/pixel' | awk -F':' '{ print $2 }'`
sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel ${cm_per_pixel}/" ${sbp_cfg}
if grep -q '^beta2' $sbp_cfg; then
MODEL="dbeta"
MODEL_NAME="double-beta"
else
MODEL="beta"
MODEL_NAME="single-beta"
fi
PROG_TPROFILE="fit_wang2012_model"
tprofile_dump="wang2012_dump.qdp"
tprofile_param_center="wang2012_param_center.txt"
tprofile_fit_center="tprofile_fit_center.qdp"
tprofile_center="tprofile_dump_center.qdp"
${base_path}/${PROG_TPROFILE} ${tprofile_data} ${tprofile_cfg} \
${cm_per_pixel} 2> /dev/null | tee ${tprofile_param_center}
cp -fv ${tprofile_dump} ${tprofile}
mv -fv ${tprofile_dump} ${tprofile_center}
mv -fv fit_result.qdp ${tprofile_fit_center}
${base_path}/calc_coolfunc.sh ${tprofile_center} \
${abund} ${nh} ${z} ${cfunc_profile}
cfunc_profile_center="coolfunc_profile_center.txt"
cp -f ${cfunc_profile} ${cfunc_profile_center}
PROG_SBPFIT="fit_${MODEL}_sbp"
RES_SBPFIT="${MODEL}_param.txt"
RES_SBPFIT_CENTER="${MODEL}_param_center.txt"
${base_path}/${PROG_SBPFIT} ${sbp_cfg} 2> /dev/null
mv -fv ${RES_SBPFIT} ${RES_SBPFIT_CENTER}
cat ${RES_SBPFIT_CENTER}
mv -fv sbp_fit.qdp sbp_fit_center.qdp
mv -fv rho_fit.qdp rho_fit_center.qdp
mv -fv rho_fit.dat rho_fit_center.dat
mv -fv entropy.qdp entropy_center.qdp
${base_path}/fit_nfw_mass mass_int.dat ${z} ${nfw_rmin_kpc} 2> /dev/null
mv -fv nfw_param.txt nfw_param_center.txt
mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
mv -fv nfw_dump.qdp mass_int_center.qdp
mv -fv overdensity.qdp overdensity_center.qdp
mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
## only calculate central value {{{
if [ "${F_C}" = "YES" ]; then
RES_CENTER="center_only_results.txt"
[ -e "${RES_CENTER}" ] && mv -f ${RES_CENTER} ${RES_CENTER}_bak
${base_path}/analyze_mass_profile.py 200 c | tee -a ${RES_CENTER}
${base_path}/analyze_mass_profile.py 500 c | tee -a ${RES_CENTER}
${base_path}/analyze_mass_profile.py 1500 c | tee -a ${RES_CENTER}
${base_path}/analyze_mass_profile.py 2500 c | tee -a ${RES_CENTER}
${base_path}/fg_2500_500.py c | tee -a ${RES_CENTER}
exit 0
fi
## central value }}}
## ------------------------------------------------------------------
# clean previous files
rm -f summary_overdensity.qdp
rm -f summary_mass_profile.qdp
rm -f summary_gas_mass_profile.qdp
rm -f summary_entropy.qdp
# Estimate the errors of Lx and Fx by Monte Carlo simulation
printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
MC_TIMES=100
for i in `seq 1 ${MC_TIMES}`; do
${base_path}/shuffle_profile.py ${tprofile_data} tmp_tprofile.txt
${base_path}/shuffle_profile.py ${sbp_data} tmp_sbprofile.txt
# temperature profile
${base_path}/${PROG_TPROFILE} tmp_tprofile.txt ${tprofile_cfg} \
${cm_per_pixel} 2> /dev/null
mv -f ${tprofile_dump} ${tprofile}
TMP_SBP_CFG="tmp_sbp.cfg"
[ -e "${TMP_SBP_CFG}" ] && rm -f ${TMP_SBP_CFG}
cat ${sbp_cfg} | while read l; do
if echo "${l}" | grep -q '^sbp_data' >/dev/null; then
echo "sbp_data tmp_sbprofile.txt" >> ${TMP_SBP_CFG}
elif echo "${l}" | grep -q '^tprofile' >/dev/null; then
echo "tprofile ${tprofile}" >> ${TMP_SBP_CFG}
else
echo "${l}" >> ${TMP_SBP_CFG}
fi
done
printf "## ${i} / ${MC_TIMES} ##\n"
printf "## `pwd -P` ##\n"
${base_path}/calc_coolfunc.sh ${tprofile} ${abund} ${nh} ${z} ${cfunc_profile}
${base_path}/${PROG_SBPFIT} ${TMP_SBP_CFG} 2> /dev/null
cat ${RES_SBPFIT}
${base_path}/fit_nfw_mass mass_int.dat ${z} ${nfw_rmin_kpc} 2> /dev/null
cat nfw_dump.qdp >> summary_mass_profile.qdp
echo "no no no" >> summary_mass_profile.qdp
cat overdensity.qdp >> summary_overdensity.qdp
echo "no no no" >> summary_overdensity.qdp
cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp
echo "no no no" >> summary_gas_mass_profile.qdp
cat entropy.qdp >> summary_entropy.qdp
echo "no no no" >> summary_entropy.qdp
done # end of `for'
# recover the files of original center values
cp -f ${cfunc_profile_center} ${cfunc_profile}
cp -f ${tprofile_center} ${tprofile}
printf "\n+++++++++++++++++ MONTE CARLO END +++++++++++++++++++\n"
## analyze results
RES_TMP="_tmp_result_mrl.txt"
RES_FINAL="final_result.txt"
[ -e "${RES_TMP}" ] && mv -fv ${RES_TMP} ${RES_TMP}_bak
[ -e "${RES_FINAL}" ] && mv -fv ${RES_FINAL} ${RES_FINAL}_bak
${base_path}/analyze_mass_profile.py 200 | tee -a ${RES_TMP}
${base_path}/analyze_mass_profile.py 500 | tee -a ${RES_TMP}
${base_path}/analyze_mass_profile.py 1500 | tee -a ${RES_TMP}
${base_path}/analyze_mass_profile.py 2500 | tee -a ${RES_TMP}
R200_VAL=`grep '^r200' ${RES_TMP} | awk '{ print $2 }'`
R500_VAL=`grep '^r500' ${RES_TMP} | awk '{ print $2 }'`
R1500_VAL=`grep '^r1500' ${RES_TMP} | awk '{ print $2 }'`
R2500_VAL=`grep '^r2500' ${RES_TMP} | awk '{ print $2 }'`
R200E=`grep '^r200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
R500E=`grep '^r500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
R1500E=`grep '^r1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
R2500E=`grep '^r2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
M200E=`grep '^m200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
M500E=`grep '^m500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
M1500E=`grep '^m1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
M2500E=`grep '^m2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
MG200E=`grep '^gas_m200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
MG500E=`grep '^gas_m500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
MG1500E=`grep '^gas_m1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
MG2500E=`grep '^gas_m2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
FG200E=`grep '^gas_fraction200' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
FG500E=`grep '^gas_fraction500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
FG1500E=`grep '^gas_fraction1500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
FG2500E=`grep '^gas_fraction2500' ${RES_TMP} | tail -n 1 | awk '{ print $2,$3 }'`
printf "\n+++++++++++++++ RESULTS (${MODEL_NAME}) +++++++++++++++\n"
printf "model: ${MODEL_NAME}\n" | tee -a ${RES_FINAL}
cat ${RES_SBPFIT_CENTER} | tee -a ${RES_FINAL}
printf "\n" | tee -a ${RES_FINAL}
printf "r200= ${R200E} kpc\n" | tee -a ${RES_FINAL}
printf "m200= ${M200E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_m200= ${MG200E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_fraction200= ${FG200E} x100%%\n" | tee -a ${RES_FINAL}
printf "r500= ${R500E} kpc\n" | tee -a ${RES_FINAL}
printf "m500= ${M500E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_m500= ${MG500E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_fraction500= ${FG500E} x100%%\n" | tee -a ${RES_FINAL}
printf "r1500= ${R1500E} kpc\n" | tee -a ${RES_FINAL}
printf "m1500= ${M1500E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_m1500= ${MG1500E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_fraction1500= ${FG1500E} x100%%\n" | tee -a ${RES_FINAL}
printf "r2500= ${R2500E} kpc\n" | tee -a ${RES_FINAL}
printf "m2500= ${M2500E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_m2500= ${MG2500E} Msun\n" | tee -a ${RES_FINAL}
printf "gas_fraction2500= ${FG2500E} x100%%\n" | tee -a ${RES_FINAL}
printf "\n" | tee -a ${RES_FINAL}
${base_path}/fg_2500_500.py | tee -a ${RES_FINAL}
printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n"
|
