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|
#!/bin/sh
#
# This script generate a series of regions for the extraction of
# radial surface brightness profile (SBP).
#
# Regions geneartion algorithm:
# (TODO)
#
# Author: Zhenghao ZHU
# Created: ???
#
# Change logs:
# 2017-02-26, Weitian LI
# * Further simplify arguments handling
# * Remove test support (-t) for simplification
# * Rename 'stn' to 'SNR'
# * Add ds9 view
# v2.0, 2015/06/03, Weitian LI
# * Copy needed pfiles to current working directory, and
# set environment variable $PFILES to use these first.
# * Added missing punlearn
# * Removed the section of dmlist.par & dmextract.par deletion
# minimal counts
CNT_MIN=2500
# energy: 700-7000eV -- channel 49:479
ERANGE=700:7000
CH_LOW=49
CH_HI=479
# energy 9.5-12keV -- channel 651:822
CH_BKG_LOW=651
CH_BKG_HI=822
if [ $# -lt 2 ] ; then
echo "usage: `basename $0` <evt> <bkg_pi> [ centroid.reg rspec.reg ]"
exit 1
fi
EVT=$1
BKGSPC=$2
REG_IN=${3:-centroid.reg}
REG_OUT=${4:-rspec.reg}
X=`\grep -i 'point' ${REG_IN} | head -n 1 | tr -d 'a-zA-Z() ' | awk -F',' '{ print $1 }'`
Y=`\grep -i 'point' ${REG_IN} | head -n 1 | tr -d 'a-zA-Z() ' | awk -F',' '{ print $2 }'`
echo "EVT: ${EVT}"
echo "ERANGE: ${ERANGE}"
echo "Center: (${X},${Y})"
echo "BKGSPC: ${BKGSPC}"
echo ""
## prepare parameter files (pfiles) {{{
CIAO_TOOLS="dmstat dmlist dmextract"
# Copy necessary pfiles for localized usage
for tool in ${CIAO_TOOLS}; do
pfile=`paccess ${tool}`
[ -n "${pfile}" ] && punlearn ${tool} && cp -Lvf ${pfile} .
done
# Modify environment variable 'PFILES' to use local pfiles first
export PFILES="./:${PFILES}"
## pfiles }}}
[ -f "${REG_OUT}" ] && mv -fv ${REG_OUT} ${REG_OUT}_bak
RIN=0
ROUT=0
CNTS=0
ROUT_MAX=1500
SNR=10
SNR_FILE="spc_snr.dat"
[ -e ${SNR_FILE} ] && mv -fv ${SNR_FILE} ${SNR_FILE}_bak
i=0
while [ `echo "$SNR > 2 "| bc -l` -eq 1 ] ; do
if [ `echo "$ROUT > $ROUT_MAX" | bc -l` -eq 1 ]; then
break
fi
RIN=${ROUT}
if [ $i -gt 0 ]; then
printf " #$i: ${TMP_REG}\n"
echo "${TMP_REG}" >> ${REG_OUT}
fi
i=`expr $i + 1`
printf "Generate region #$i ...\n"
if [ ${ROUT} -eq 0 ] ; then
ROUT=5
fi
TMP_REG="pie($X,$Y,$RIN,$ROUT,0,360)"
punlearn dmlist
CNTS=`dmlist "${EVT}[energy=${ERANGE}][sky=${TMP_REG}]" blocks | \grep 'EVENTS' | awk '{print $8}'`
while [ ${CNTS} -lt ${CNT_MIN} ]; do
ROUT=`expr $ROUT + 1 `
if [ `echo "$ROUT > $ROUT_MAX" | bc -l` -eq 1 ]; then
break
fi
TMP_REG="pie($X,$Y,$RIN,$ROUT,0,360)"
punlearn dmlist
CNTS=`dmlist "${EVT}[energy=${ERANGE}][sky=${TMP_REG}]" blocks | \grep 'EVENTS' | awk '{print $8}'`
done
TMP_SPC=_tmpspc.pi
punlearn dmextract
dmextract infile="${EVT}[sky=${TMP_REG}][bin pi]" outfile=${TMP_SPC} wmap="[energy=300:12000][bin tdet=8]" clobber=yes
punlearn dmstat
INDEX_SRC=`dmstat "${TMP_SPC}[channel=${CH_BKG_LOW}:${CH_BKG_HI}][cols counts]" | \grep "sum:" | awk '{print $2}' `
INDEX_BKG=`dmstat "${BKGSPC}[channel=${CH_BKG_LOW}:${CH_BKG_HI}][cols counts]" | \grep "sum:" | awk '{print $2}' `
COUNT_SRC=`dmstat "${TMP_SPC}[channel=${CH_LOW}:${CH_HI}][cols counts]" | \grep "sum:" | awk '{print $2}' `
COUNT_BKG=`dmstat "${BKGSPC}[channel=${CH_LOW}:${CH_HI}][cols counts]" | \grep "sum:" | awk '{print $2}' `
if [ ${INDEX_SRC} -eq 0 ] ;then
SNR=10000
else
SNR=`echo ${COUNT_SRC} ${INDEX_SRC} ${COUNT_BKG} ${INDEX_BKG} | awk '{ printf("%f",$1/$2/$3*$4) }' `
fi
echo " SNR: ${SNR}"
echo "${SNR}" >> "${SNR_FILE}"
done
## fix 'i', to consistent with the actual annuluses
i=`expr $i - 1`
if [ $i -lt 3 ]; then
printf "*** WARNING: NOT ENOUGH PHOTONS ***\n"
printf "*** TOTAL $i regions ***\n\n"
if [ ! -f ${REG_OUT} ] || [ `wc -l ${REG_OUT} | awk '{ print $1 }'` -eq 0 ]; then
printf "*** ONLY 1 REGION: ${TMP_REG}\n"
rm -f ${REG_OUT}
echo "${TMP_REG}" >> ${REG_OUT}
fi
elif [ $i -gt 6 ]; then
mv -fv ${REG_OUT} ${REG_OUT}_2500bak
CNTS=0
punlearn dmlist
CNTS_TOTAL=`dmlist "${EVT}[energy=${ERANGE}][sky=pie($X,$Y,0,$RIN,0,360)]" blocks | \grep 'EVENTS' | awk '{print $8}'`
CNTS_USE=`echo "${CNTS_TOTAL} 6" | awk '{printf("%d", $1/$2)}'`
echo "CNT_USE: ${CNT_USE}"
printf "*** too many annulus ***\n"
printf "*** using ${CNTS_USE} per region ***\n"
RIN=0
ROUT=5
j=1
while [ $j -le 6 ] ; do
while [ ${CNTS} -lt ${CNTS_USE} ] ; do
ROUT=`expr ${ROUT} + 1 `
if [ ${ROUT} -gt ${ROUT_MAX} ]; then
break
fi
TMP_REG="pie($X,$Y,$RIN,$ROUT,0,360)"
punlearn dmlist
CNTS=`dmlist "${EVT}[energy=${ERANGE}][sky=${TMP_REG}]" blocks | \grep 'EVENTS' | awk '{print $8}'`
done
j=`expr $j + 1 `
echo "${TMP_REG}" >> ${REG_OUT}
RIN=$ROUT
CNTS=0
done
fi
printf "check rspec regions ...\n"
ds9 ${EVT} -regions format ciao -regions system physical \
-regions ${REG_OUT} -cmap he -bin factor 4
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