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#!/bin/sh
#
unalias -a
export LC_COLLATE=C
###########################################################
## process `evt2 file' generated by `chandra_repro' ##
## to produce a `clean evt2 file' ##
## (remove point source and flares) ##
## for later image and spectral analysis ##
## ##
## NOTES: ##
## based on previous `ciao_process_evt2.sh' ##
## support ACIS-I(chip: 0-3) and ACIS-S(chip: 7) ##
## determine by check `DETNAM' for chip number ##
## if `DETNAM' has `0123', then `ACIS-I' ##
## if `DETNAM' has `7', then `ACIS-S' ##
## ##
## Weitian LI <liweitianux@gmail.com># ##
## 2012/08/16 ##
###########################################################
##
VERSION="v3.1"
UPDATED="2017-02-06"
##
## ChangeLogs:
## v3.1, 2017-02-06, Weitian LI
## * Specify regions format and system for ds9
## v3.0, 2015/06/02, Aaron LI
## * Added 'unalias -a' and 'export LC_COLLATE=C'
## * Replaced 'grep' with '\grep', 'ls' with '\ls'
## * Copy needed pfiles to current working directory, and
## set environment variable $PFILES to use these first.
## v2.2, 2014/10/30, Weitian LI
## small fix to the generation of chips script:
## changed '>>' to '>'
## v2.1, 2012/08/16, Weitian LI
## improve invoke `chips', run it in a separate terminal
##
## error code {{{
ERR_USG=1
ERR_DIR=11
ERR_EVT=12
ERR_BKG=13
ERR_REG=14
ERR_ASOL=21
ERR_BPIX=22
ERR_PBK=23
ERR_MSK=24
ERR_BKGTY=31
ERR_SPEC=32
ERR_DET=41
## error code }}}
## usage, help {{{
case "$1" in
-[hH]*|--[hH]*)
printf "usage:\n"
printf " `basename $0` evt=<raw_evt_file>\n"
printf "\nversion:\n"
printf " ${VERSION}, ${UPDATED}\n"
exit ${ERR_USG}
;;
esac
## usage, help }}}
## default parameters {{{
# default `event file' which used to match `blanksky' files
#DFT_EVT="_NOT_EXIST_"
DFT_EVT="`\ls acisf?????*_repro_evt2.fits 2> /dev/null`"
## default parameters }}}
## functions {{{
# process commandline arguments
# cmdline arg format: `KEY=VALUE'
getopt_keyval() {
until [ -z "$1" ]
do
key=${1%%=*} # extract key
val=${1#*=} # extract value
keyval="${key}=\"${val}\""
echo "## getopt: eval '${keyval}'"
eval ${keyval}
shift # shift, process next one
done
}
## functions }}}
## parameters {{{
# process cmdline args using `getopt_keyval'
getopt_keyval "$@"
# check given parameters
# check evt file
if [ -r "${evt}" ]; then
EVT=${evt}
elif [ -r "${DFT_EVT}" ]; then
EVT=${DFT_EVT}
else
read -p "evt2 file: " EVT
if ! [ -r "${EVT}" ]; then
printf "ERROR: cannot access given \`${EVT}' evt file\n"
exit ${ERR_EVT}
fi
fi
printf "## use evt file: \`${EVT}'\n"
## parameters }}}
## prepare parameter files (pfiles) {{{
CIAO_TOOLS="dmkeypar dmcopy celldetect dmextract"
# Copy necessary pfiles for localized usage
for tool in ${CIAO_TOOLS}; do
pfile=`paccess ${tool}`
[ -n "${pfile}" ] && punlearn ${tool} && cp -Lvf ${pfile} .
done
# Modify environment variable 'PFILES' to use local pfiles first
export PFILES="./:${PFILES}"
## pfiles }}}
## determine ACIS type {{{
punlearn dmkeypar
DETNAM=`dmkeypar ${EVT} DETNAM echo=yes`
if echo ${DETNAM} | \grep -q 'ACIS-0123'; then
printf "## \`DETNAM' (${DETNAM}) has chips 0123\n"
printf "## ACIS-I\n"
ACIS_TYPE="ACIS-I"
CCD="0:3"
ROOTNAME="evt2_c`echo ${CCD} | tr ':' '-'`"
elif echo ${DETNAM} | \grep -q 'ACIS-[0-6]*7'; then
printf "## \`DETNAM' (${DETNAM}) has chip 7\n"
printf "## ACIS-S\n"
ACIS_TYPE="ACIS-S"
CCD="7"
ROOTNAME="evt2_c${CCD}"
else
printf "ERROR: unknown detector type: ${DETNAM}\n"
exit ${ERR_DET}
fi
## ACIS type }}}
## main process {{{
printf "filter raw evt2 file by ccd_id ...\n"
EVT2_ORIG="${ROOTNAME}_orig.fits"
punlearn dmcopy
dmcopy infile="${EVT}[ccd_id=${CCD}]" outfile=${EVT2_ORIG} clobber=yes
# detect point sources
printf "using \`celldetect' to find the point sources ...\n"
CELLD="celld_${ROOTNAME}"
[ -e "${CELLD}.reg" ] && mv -fv ${CELLD}.reg ${CELLD}.reg_bak
punlearn celldetect
celldetect infile=${EVT2_ORIG} outfile="${CELLD}.fits" \
regfile="${CELLD}.reg" clobber=yes
printf "check the result of \`celldetect' ...\n"
printf "modify if necessary and save as the same name, \`${CELLD}.reg'\n"
cp -fv ${CELLD}.reg ${CELLD}_orig.reg
ds9 ${EVT2_ORIG} -regions format ciao \
-regions system physical \
-regions ${CELLD}.reg \
-cmap he -bin factor 2
EVT2_RMSRCS="${ROOTNAME}_rmsrcs.fits"
punlearn dmcopy
dmcopy infile="${EVT2_ORIG}[exclude sky=region(${CELLD}.reg)]" \
outfile=${EVT2_RMSRCS} clobber=yes
LC_REG="ex_bkg.reg"
printf "filter flares ...\n"
printf "select a big source region and save as \`${LC_REG}'\n"
touch ${LC_REG}
ds9 ${EVT2_RMSRCS} -cmap he -bin factor 2
printf "create the lightcurve ...\n"
LC="${LC_REG%.reg}.lc"
[ -e "${LC}" ] && mv -fv ${LC} ${LC}_bak
punlearn dmextract
dmextract infile="${EVT2_RMSRCS}[exclude sky=region(${LC_REG})][bin time=::200]" \
outfile="${LC}" opt=ltc1 clobber=yes
# generate a script for `chips'
# for convenience and backup
LC_SCRIPT="_${LC%.lc}.chips"
LC_SCALE=1.2
GTI="${LC%.lc}.gti"
cat > ${LC_SCRIPT} << _EOF_
from lightcurves import *
lc_clean("${LC}")
lc_clean("${LC}", scale=${LC_SCALE}, outfile="${GTI}")
print_window("${LC%.lc}_lc.jpg", ["format", "jpg", "clobber", "True"])
_EOF_
printf "generate GTI ...\n"
# [-x] let chips run in a separate terminal
chips -x ${LC_SCRIPT}
printf "remove the background flare ...\n"
EVT2_CLEAN="${ROOTNAME}_clean.fits"
punlearn dmcopy
dmcopy infile="${EVT2_RMSRCS}[@${GTI}]" outfile=${EVT2_CLEAN} clobber=yes
## main process }}}
printf "FINISHED\n"
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