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authorAaron LI <aly@aaronly.me>2019-01-28 20:33:31 +0800
committerAaron LI <aly@aaronly.me>2019-01-28 20:33:31 +0800
commitf869e6ed4d62e58e3106f794061ecf7dd4e24f4c (patch)
tree36d7146f0c83ef2cce7e3aa0fb1ff0160d862fd2 /fg21sim/extragalactic
parent2b1cfc721c22b5cc7956e34ecec93e469b5b56da (diff)
downloadfg21sim-f869e6ed4d62e58e3106f794061ecf7dd4e24f4c.tar.bz2
clusters/megertree: Minor cleanups
Diffstat (limited to 'fg21sim/extragalactic')
-rw-r--r--fg21sim/extragalactic/clusters/mergertree.py16
1 files changed, 9 insertions, 7 deletions
diff --git a/fg21sim/extragalactic/clusters/mergertree.py b/fg21sim/extragalactic/clusters/mergertree.py
index accf98a..abda0d4 100644
--- a/fg21sim/extragalactic/clusters/mergertree.py
+++ b/fg21sim/extragalactic/clusters/mergertree.py
@@ -1,5 +1,5 @@
-# Copyright (c) 2017-2018 Weitian LI <liweitianux@live.com>
-# MIT license
+# Copyright (c) 2017-2019 Weitian LI <wt@liwt.net>
+# MIT License
"""
Merger tree that represents the merging history of a cluster using
@@ -21,9 +21,10 @@ class MergerTree:
-----------
Merged (M0, z0, age0)
~~~~~~~~~~~~~~~~~~~~~
- / \
+ | |
Main (M1, z1, age1) Sub (M2, z2, age2)
~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~
+
* "Merged" is the merged cluster from "Main" and "Sub" at redshift
z1 (=z2) or cosmic time age1 (=age2).
M0 = M1 + M2, M1 > M2
@@ -31,7 +32,7 @@ class MergerTree:
Parameters
----------
- data : dict
+ data : any (e.g., a dictionary)
Data (e.g., mass, redshift, age) associated with this tree node.
main, sub : `~MergerTree`
Links to the main and sub (optional) clusters between which the
@@ -137,7 +138,7 @@ def plot_mtree(mtree, outfile, figsize=(12, 8)):
"""
Plot the cluster merger tree.
- TODO/XXX: This function needs significant speed optimization!
+ XXX: Need to speed up this function.
Parameters
----------
@@ -158,6 +159,7 @@ def plot_mtree(mtree, outfile, figsize=(12, 8)):
ax.plot(x, y, marker="o", markersize=1.5, color="black",
linestyle=None)
return
+
# Plot a point for current tree node
x = [tree.data["age"]]
y = [tree.data["mass"]]
@@ -172,18 +174,18 @@ def plot_mtree(mtree, outfile, figsize=(12, 8)):
x = [tree.main.data["age"], tree.sub.data["age"]]
y = [tree.main.data["mass"], tree.sub.data["mass"]]
ax.plot(x, y, color="green", linewidth=1, alpha=0.8)
+
# Recursively plot the descendant nodes
_plot(tree.main, ax)
_plot(tree.sub, ax)
- # Import matplotlib when needed
from matplotlib.figure import Figure
from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas
fig = Figure(figsize=figsize)
canvas = FigureCanvas(fig)
ax = fig.add_subplot(1, 1, 1)
- print("Plotting merger tree, may take a while ...")
+ print("Plotting the merger tree, may take a while ...")
_plot(mtree, ax=ax)
ax.set_xlabel("Cosmic time [Gyr]")
ax.set_ylabel("Mass [Msun]")