1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
|
# Copyright (c) 2017-2019 Weitian LI <wt@liwt.net>
# MIT License
"""
Simulate (giant) radio halos originating from the recent merger
events, which generate cluster-wide turbulence and accelerate the
primary (i.e., fossil) relativistic electrons to high energies to
be synchrotron-bright. This *turbulence re-acceleration* model
is currently most widely accepted to explain the (giant) radio halos.
The simulation method is somewhat based on the statistical (Monte
Carlo) method proposed by [cassano2005]_, but with extensive
modifications and improvements.
References
----------
.. [brunetti2011]
Brunetti & Lazarian 2011, MNRAS, 410, 127
http://adsabs.harvard.edu/abs/2011MNRAS.410..127B
.. [cassano2005]
Cassano & Brunetti 2005, MNRAS, 357, 1313
http://adsabs.harvard.edu/abs/2005MNRAS.357.1313C
.. [cassano2006]
Cassano, Brunetti & Setti, 2006, MNRAS, 369, 1577
http://adsabs.harvard.edu/abs/2006MNRAS.369.1577C
.. [cassano2012]
Cassano et al. 2012, A&A, 548, A100
http://adsabs.harvard.edu/abs/2012A%26A...548A.100C
.. [donnert2013]
Donnert 2013, AN, 334, 615
http://adsabs.harvard.edu/abs/2013AN....334..515D
.. [donnert2014]
Donnert & Brunetti 2014, MNRAS, 443, 3564
http://adsabs.harvard.edu/abs/2014MNRAS.443.3564D
.. [hogg1999]
Hogg 1999, arXiv:astro-ph/9905116
http://adsabs.harvard.edu/abs/1999astro.ph..5116H
.. [miniati2015]
Miniati 2015, ApJ, 800, 60
http://adsabs.harvard.edu/abs/2015ApJ...800...60M
.. [pinzke2017]
Pinzke, Oh & Pfrommer 2017, MNRAS, 465, 4800
http://adsabs.harvard.edu/abs/2017MNRAS.465.4800P
.. [sarazin1999]
Sarazin 1999, ApJ, 520, 529
http://adsabs.harvard.edu/abs/1999ApJ...520..529S
"""
import logging
from functools import lru_cache
import numpy as np
from scipy import integrate
from . import helper
from .solver import FokkerPlanckSolver
from .emission import HaloEmission
from ...share import CONFIGS, COSMO
from ...utils.units import (Units as AU,
UnitConversions as AUC,
Constants as AC)
logger = logging.getLogger(__name__)
class RadioHalo1M:
"""
Simulate the radio halo properties for a galaxy cluster that is
experiencing an on-going merger or had a merger recently.
Description
-----------
1. Calculate the turbulence persistence time (tau_turb; ~<1 Gyr);
2. Calculate the diffusion coefficient (D_pp) from the systematic
acceleration timescale (tau_acc; ~0.1 Gyr). The acceleration
diffusion is assumed to have an action time ~ tau_turb (i.e.,
only during turbulence persistence), and then is disabled (i.e.,
only radiation and ionization losses later);
3. Assume the electrons are constantly injected and has a power-law
energy spectrum, determine the injection rate by further assuming
that the total injected electrons has energy of a fraction (eta_e)
of the ICM total thermal energy;
4. Set the electron density/spectrum be the accumulated electrons
injected during t_merger time, then evolve it for time_init period
considering only losses and constant injection, in order to derive
an approximately steady electron spectrum for following use;
5. Calculate the magnetic field from the cluster total mass (which
is assumed to be growth linearly from M_main to M_obs);
6. Calculate the energy losses for the coefficients of Fokker-Planck
equation;
7. Solve the Fokker-Planck equation to derive the relativistic
electron spectrum at t_obs (i.e., z_obs);
8. Calculate the synchrotron emissivity from the derived electron
spectrum.
Parameters
----------
M_obs : float
Cluster virial mass at the current observation (simulation end) time.
Unit: [Msun]
z_obs : float
Redshift of the current observation (simulation end) time.
M_main, M_sub : float
The main and sub cluster masses before the (major) merger.
Unit: [Msun]
z_merger : float
The redshift when the (major) merger begins.
Attributes
----------
fpsolver : `~FokkerPlanckSolver`
The solver instance to calculate the electron spectrum evolution.
radius : float
The halo radius
Unit: [kpc]
gamma : 1D float `~numpy.ndarray`
The Lorentz factors of the adopted logarithmic grid to solve the
equation.
_acceleration_disabled : bool
Whether the turbulence acceleration is intentionally disabled?
"""
compID = "extragalactic/halos"
name = "giant radio halos"
def __init__(self, M_obs, z_obs, M_main, M_sub, z_merger,
configs=CONFIGS):
self.M_obs = M_obs
self.z_obs = z_obs
self.t_obs = COSMO.age(z_obs)
self.M_main = M_main
self.M_sub = M_sub
self.z_merger = z_merger
self.t_merger = COSMO.age(z_merger)
self._acceleration_disabled = False
self._set_configs(configs)
self._set_solver()
def _set_configs(self, configs):
comp = self.compID
self.configs = configs
self.f_acc = configs.getn(comp+"/f_acc")
self.f_radius = configs.getn(comp+"/f_radius")
self.eta_turb = configs.getn(comp+"/eta_turb")
self.eta_e = configs.getn(comp+"/eta_e")
self.x_cr = configs.getn(comp+"/x_cr")
self.mass_index = configs.getn(comp+"/mass_index")
self.gamma_min = configs.getn(comp+"/gamma_min")
self.gamma_max = configs.getn(comp+"/gamma_max")
self.gamma_np = configs.getn(comp+"/gamma_np")
self.buffer_np = configs.getn(comp+"/buffer_np")
if self.buffer_np == 0:
self.buffer_np = None
self.time_step = configs.getn(comp+"/time_step")
self.time_init = configs.getn(comp+"/time_init")
self.injection_index = configs.getn(comp+"/injection_index")
self.f_rc = configs.getn(comp+"/f_rc")
self.beta = configs.getn(comp+"/beta")
def _set_solver(self):
self.fpsolver = FokkerPlanckSolver(
xmin=self.gamma_min,
xmax=self.gamma_max,
x_np=self.gamma_np,
tstep=self.time_step,
f_advection=self.fp_advection,
f_diffusion=self.fp_diffusion,
f_injection=self.fp_injection,
buffer_np=self.buffer_np,
)
@property
@lru_cache()
def gamma(self):
"""
The logarithmic grid adopted for solving the equation.
"""
return self.fpsolver.x
@property
def t_begin(self):
"""
The cosmic time when the merger begins.
Unit: [Gyr]
"""
return self.t_merger
@property
def radius(self):
"""
The estimated radius of the simulated radio halo.
Unit: [kpc]
"""
return self.f_radius * self.radius_turb(self.t_merger)
@lru_cache()
def radius_strip(self, t_merger):
"""
The stripping radius of the in-falling sub-cluster at time t.
Unit: [kpc]
"""
self._validate_t_merger(t_merger)
z = COSMO.redshift(t_merger)
M_main = self.mass_main(t_merger)
M_sub = self.mass_sub(t_merger)
return helper.radius_stripping(M_main, M_sub, z,
f_rc=self.f_rc, beta=self.beta)
@lru_cache()
def radius_turb(self, t_merger):
"""
The radius of the turbulence region, which is estimated as the
sum of stripping radius ``r_s`` of the sub-cluster and the core
radius ``r_c`` of the main cluster.
Unit: [kpc]
"""
self._validate_t_merger(t_merger)
z = COSMO.redshift(t_merger)
M_main = self.mass_main(t_merger)
r_s = self.radius_strip(t_merger)
r_c = self.f_rc * helper.radius_virial(M_main, z)
return r_s + r_c
@lru_cache()
def duration_turb(self, t_merger):
"""
The duration that the turbulence persists strong enough to be able
to effectively accelerate the electrons, which is estimated as:
τ_turb ~ d / v_impact ~ 2*R_turb / v_impact.
Reference: [miniati2015],Sec.5
Unit: [Gyr]
"""
self._validate_t_merger(t_merger)
z_merger = COSMO.redshift(t_merger)
M_main = self.mass_main(t=t_merger)
M_sub = self.mass_sub(t=t_merger)
d = 2 * self.radius_turb(t_merger)
v_i = helper.velocity_impact(M_main, M_sub, z_merger)
uconv = AUC.kpc2km * AUC.s2Gyr # [kpc]/[km/s] => [Gyr]
return uconv * d / v_i # [Gyr]
@lru_cache()
def velocity_turb(self, t_merger):
"""
Calculate the turbulence velocity dispersion.
NOTE
----
During the merger, a fraction of the merger kinetic energy is
transferred into the turbulence within the region of radius R_turb.
Then estimate the turbulence velocity dispersion from its energy.
Merger energy:
E_merger ≅ <ρ_gas> * v_i^2 * V_turb
V_turb = ᴨ * r_s^2 * (R_vir+r_s)
Turbulence energy:
E_turb ≅ η_turb * E_merger ≅ 0.5 * M_turb * <v_turb^2>
=> Velocity dispersion:
<v_turb^2> ≅ 2*η_turb * <ρ_gas> * v_i^2 * V_turb / M_turb
M_turb = int_0^R_turb[ ρ_gas(r)*4ᴨ*r^2 ]dr
where:
<ρ_gas>: mean gas density of the main cluster
R_vir: virial radius of the main cluster
R_turb: radius of turbulence region
v_i: impact velocity
r_s: stripping radius of the in-falling sub-cluster
Returns
-------
v_turb : float
The turbulence velocity dispersion
Unit: [km/s]
"""
self._validate_t_merger(t_merger)
z = COSMO.redshift(t_merger)
M_main = self.mass_main(t_merger)
M_sub = self.mass_sub(t_merger)
r_s = self.radius_strip(t_merger) # [kpc]
R_turb = self.radius_turb(t_merger) # [kpc]
rho_gas_f = helper.calc_gas_density_profile(
M_main+M_sub, z, f_rc=self.f_rc, beta=self.beta)
M_turb = 4*np.pi * integrate.quad(
lambda r: rho_gas_f(r) * r**2,
a=0, b=R_turb)[0] # [Msun]
v_i = helper.velocity_impact(M_main, M_sub, z) # [km/s]
rho_main = helper.density_number_thermal(M_main, z) # [cm^-3]
rho_main *= AC.mu*AC.u * AUC.g2Msun * AUC.kpc2cm**3 # [Msun/kpc^3]
R_vir = helper.radius_virial(M_main, z) # [kpc]
V_turb = np.pi * r_s**2 * R_vir # [kpc^3]
E_turb = self.eta_turb * rho_main * v_i**2 * V_turb
v2_turb = 2 * E_turb / M_turb # [km^2/s^2]
return np.sqrt(v2_turb) # [km/s]
@lru_cache()
def mach_turb(self, t_merger):
"""
The turbulence Mach number determined from its velocity dispersion.
"""
self._validate_t_merger(t_merger)
cs = helper.speed_sound(self.kT(t_merger)) # [km/s]
v_turb = self.velocity_turb(t_merger) # [km/s]
return v_turb / cs
@lru_cache()
def tau_acceleration(self, t_merger):
"""
Calculate the electron acceleration timescale due to turbulent
waves, which describes the turbulent acceleration efficiency.
Here we consider the turbulence cascade mode through scattering
in the high-β ICM mediated by plasma instabilities (firehose,
mirror) rather than Coulomb scattering. Therefore, the fast modes
damp by TTD (transit time damping) on relativistic rather than
thermal particles, and the diffusion coefficient is given by:
D'_γγ = 2 * γ^2 * ζ * k_L * v_t^4 / (c_s^3 * X_cr)
where:
ζ: factor describing the effectiveness of plasma instabilities
X_cr: relative energy density of cosmic rays
k_L (= 2π/L): turbulence injection scale
v_t: turbulence velocity dispersion
c_s: sound speed
Hence, the acceleration timescale is:
τ'_acc = γ^2 / (4 * D'_γγ)
= X_cr * c_s^3 / (8 * ζ * k_L * v_t^4)
Previous studies show that more massive clusters are more efficient
to accelerate electrons to be radio bright. To further account for
this scaling relation:
D_γγ = D'_γγ * f_m * (M_main / 1e15)^m
where:
m: scaling index
f_m: normalization
Therefore, the final acceleration timescale is:
τ_acc = τ'_acc * (M_main / 1e15)^(-m) / f_m
= X_cr * c_s^3 * (M_main/1e15)^(-m) / (8*f_acc * k_L * v_t^4)
with: f_acc = f_m * ζ
References
----------
* Ref.[pinzke2017],Eq.(37)
* Ref.[miniati2015],Eq.(29)
"""
self._validate_t_merger(t_merger)
k_L = 2 * np.pi / self.radius_turb(t_merger) # [kpc^-1]
cs = helper.speed_sound(self.kT(t_merger)) # [km/s]
v_t = self.velocity_turb(t_merger) # [km/s]
tau = self.x_cr * cs**3 / (8*k_L * v_t**4)
tau *= AUC.s2Gyr * AUC.kpc2km # [s kpc/km] -> [Gyr]
# Mass scaling
M_main = self.mass_main(t_merger)
f_mass = (M_main / 1e15) ** (-self.mass_index)
tau *= f_mass
tau /= self.f_acc # tune factor (folded with "zeta_ins")
return tau # [Gyr]
@property
@lru_cache()
def injection_rate(self):
"""
The constant electron injection rate assumed.
Unit: [cm^-3 Gyr^-1]
The injection rate is parametrized by assuming that the total
energy injected in the relativistic electrons during the cluster
life (e.g., ``t_obs`` here) is a fraction (``self.eta_e``)
of the total thermal energy of the cluster.
The electrons are assumed to be injected throughout the cluster
ICM/volume, i.e., do not restricted inside the halo volume.
Qe(γ) = Ke * γ^(-s),
int[ Qe(γ) γ me c^2 ]dγ * t_cluster = η_e * e_th
=>
Ke = [(s-2) * η_e * e_th * γ_min^(s-2) / (me * c^2 * t_cluster)]
References
----------
Ref.[cassano2005],Eqs.(31,32,33)
"""
kT_out = self.configs.getn("extragalactic/clusters/kT_out")
s = self.injection_index
e_th = helper.density_energy_thermal(self.M_obs, self.z_obs,
kT_out=kT_out)
term1 = (s-2) * self.eta_e * e_th # [erg cm^-3]
term2 = self.gamma_min**(s-2)
term3 = AU.mec2 * self.t_obs # [erg Gyr]
Ke = term1 * term2 / term3 # [cm^-3 Gyr^-1]
return Ke
@property
def electron_spec_init(self):
"""
The electron spectrum at ``t_begin`` to be used as the initial
condition for the Fokker-Planck equation.
This initial electron spectrum is derived from the accumulated
electron spectrum injected throughout the ``t_begin`` period,
by solving the same Fokker-Planck equation, but only considering
energy losses and constant injection, evolving for a period of
``time_init`` in order to obtain an approximately steady electron
spectrum.
Units: [cm^-3]
"""
# Accumulated electrons constantly injected until ``t_begin``
n_inj = self.fp_injection(self.gamma)
n0_e = n_inj * (self.t_begin - self.time_init)
logger.debug("Deriving the initial electron spectrum ...")
self._acceleration_disabled = True
tstart = self.t_begin
tstop = self.t_begin + self.time_init
self.fpsolver.tstep = self.time_step * 3 # To save time
n_e = self.fpsolver.solve(u0=n0_e, tstart=tstart, tstop=tstop)
self._acceleration_disabled = False
self.fpsolver.tstep = self.time_step
return n_e
def calc_electron_spectrum(self, tstart=None, tstop=None, n0_e=None,
fiducial=False):
"""
Calculate the relativistic electron spectrum by solving the
Fokker-Planck equation.
Parameters
----------
tstart : float, optional
The (cosmic) time from when to solve the Fokker-Planck equation
for relativistic electrons evolution.
Default: ``self.t_begin``.
Unit: [Gyr]
tstop : float, optional
The (cosmic) time when to derive final relativistic electrons
spectrum for synchrotron emission calculations.
Default: ``self.t_obs``.
Unit: [Gyr]
n0_e : 1D `~numpy.ndarray`, optional
The initial electron spectrum (number distribution).
Default: ``self.electron_spec_init``
Unit: [cm^-3]
fiducial : bool
Whether to disable the turbulent acceleration and derive the
fiducial electron spectrum?
Default: ``False``
Returns
-------
n_e : float 1D `~numpy.ndarray`
The solved electron spectrum.
Unit: [cm^-3]
"""
if tstart is None:
tstart = self.t_begin
if tstop is None:
tstop = self.t_obs
if n0_e is None:
n0_e = self.electron_spec_init
if fiducial:
self._acceleration_disabled = True
self.fpsolver.tstep = self.time_step * 2 # To save time
logger.debug("Calculating the %s electron spectrum ..." %
("[fiducial]" if fiducial else ""))
n_e = self.fpsolver.solve(u0=n0_e, tstart=tstart, tstop=tstop)
self._acceleration_disabled = False
self.fpsolver.tstep = self.time_step
return n_e
def calc_acc_factor(self, n_e, n_e_fiducial=None):
"""
Calculate the turbulence acceleration factor, which is estimated
as the ratio of the bolometric emissivity between the accelerated
electron spectrum and the fiducial electron spectrum derived with
turbulent acceleration turned off.
Parameters
----------
n_e : float 1D `~numpy.ndarray`
The derived (accelerated) electron spectrum.
Unit: [cm^-3]
n_e_fiducial : float 1D `~numpy.ndarray`, optional
The fiducial electron spectrum.
Unit: [cm^-3]
Returns
-------
factor : float
Acceleration factor of the bolometric emissivity.
"""
haloem = HaloEmission(gamma=self.gamma, n_e=n_e, B=1)
em = haloem.calc_emissivity_bolo()
if n_e_fiducial is None:
n_e_fiducial = self.calc_electron_spectrum(fiducial=True)
haloem.n_e = n_e_fiducial
em_fiducial = haloem.calc_emissivity_bolo()
return em / em_fiducial
def fp_injection(self, gamma, t=None):
"""
Electron injection (rate) term for the Fokker-Planck equation.
NOTE
----
The injected electrons are assumed to have a power-law spectrum
and a constant injection rate.
Qe(γ) = Ke * γ^(-s),
Ke: constant injection rate
Parameters
----------
gamma : float, or float 1D `~numpy.ndarray`
Lorentz factors of electrons
t : None
Currently a constant injection rate is assumed, therefore
this parameter is not used. Keep it for the consistency
with other functions.
Returns
-------
Qe : float, or float 1D `~numpy.ndarray`
Current electron injection rate at specified energies (gamma).
Unit: [cm^-3 Gyr^-1]
References
----------
Ref.[cassano2005],Eqs.(31,32,33)
"""
Ke = self.injection_rate # [cm^-3 Gyr^-1]
Qe = Ke * gamma**(-self.injection_index)
return Qe
def fp_diffusion(self, gamma, t):
"""
Diffusion term/coefficient for the Fokker-Planck equation.
The diffusion is directly related to the electron acceleration
and calculated from the acceleration timescale ``tau_acc``.
WARNING
-------
A zero diffusion coefficient may lead to unstable/wrong results,
since it is not properly taken care of by the solver.
By carrying out some tests, the maximum acceleration timescale
``tau_acc`` is assumed to be 10 [Gyr].
Parameters
----------
gamma : float, or float 1D `~numpy.ndarray`
The Lorentz factors of electrons
t : float
Current (cosmic) time when solving the equation
Unit: [Gyr]
Returns
-------
diffusion : float, or float 1D `~numpy.ndarray`
Diffusion coefficients
Unit: [Gyr^-1]
"""
tau_acc = tau_max = 10.0 # [Gyr]
if self._is_turb_active(t):
t_merger = self._merger_time(t)
tau_acc = self.tau_acceleration(t_merger)
if tau_acc > tau_max:
tau_acc = tau_max
return np.square(gamma) / (4 * tau_acc) # [Gyr^-1]
def fp_advection(self, gamma, t):
"""
Advection term/coefficient for the Fokker-Planck equation,
which describes a systematic tendency for upward or downward
drift of particles.
This term is also called the "generalized cooling function"
by [donnert2014], which includes all relevant energy loss
functions and the energy gain function due to turbulence.
Returns
-------
advection : float, or float 1D `~numpy.ndarray`
Advection coefficient.
Unit: [Gyr^-1]
"""
if self._is_turb_active(t):
# Turbulence acceleration and beyond
advection = (abs(self._energy_loss(gamma, t)) -
(self.fp_diffusion(gamma, t) * 2 / gamma))
else:
# To derive the initial electron spectrum
advection = abs(self._energy_loss(gamma, self.t_begin))
return advection
def _merger_time(self, t=None):
"""
The (cosmic) time when the merger begins.
Unit: [Gyr]
"""
return self.t_merger
def _validate_t_merger(self, t_merger):
"""
Validate that the given time ``t_merger`` is the time when the
merger begins, otherwise raise an error.
"""
if not np.any(np.isclose(t_merger, self.t_merger)):
raise ValueError("Not a merger time: %s" % t_merger)
def mass_merged(self, t=None):
"""
The mass of the merged cluster.
Unit: [Msun]
"""
return self.M_main + self.M_sub
def mass_sub(self, t=None):
"""
The mass of the sub cluster.
Unit: [Msun]
"""
return self.M_sub
def mass_main(self, t):
"""
Calculate the main cluster mass at the given (cosmic) time.
The main cluster is assumed to grow linearly in time from
(M_main, z_merger) to (M_obs, z_obs).
Unit: [Msun]
"""
t0 = self.t_begin
rate = (self.M_obs - self.M_main) / (self.t_obs - t0)
mass = rate * (t - t0) + self.M_main # [Msun]
return mass
def kT(self, t):
"""
The ICM mean temperature of the main cluster.
Unit: [keV]
"""
kT_out = self.configs.getn("extragalactic/clusters/kT_out")
M_main = self.mass_main(t)
z = COSMO.redshift(t)
return helper.kT_cluster(mass=M_main, z=z, kT_out=kT_out)
def magnetic_field(self, t):
"""
Calculate the mean magnetic field strength of the main cluster mass
at the given (cosmic) time.
Unit: [uG]
"""
eta_b = self.x_cr # Equipartition between magnetic field and CR
kT_out = self.configs.getn("extragalactic/clusters/kT_out")
z = COSMO.redshift(t)
mass = self.mass_main(t) # [Msun]
return helper.magnetic_field(mass=mass, z=z,
eta_b=eta_b, kT_out=kT_out)
def _is_turb_active(self, t):
"""
Is the turbulence acceleration is active at the given time?
"""
if self._acceleration_disabled:
return False
t_merger = self._merger_time(t)
tau_turb = self.duration_turb(t_merger)
return (t >= t_merger) and (t <= t_merger + tau_turb)
def _energy_loss(self, gamma, t):
"""
Energy loss mechanisms:
* inverse Compton scattering off the CMB photons
* synchrotron radiation
* Coulomb collisions
Reference: Ref.[sarazin1999],Eqs.(6,7,9)
Parameters
----------
gamma : float, or float 1D `~numpy.ndarray`
The Lorentz factors of electrons
t : float
The cosmic time/age
Unit: [Gyr]
Returns
-------
loss : float, or float 1D `~numpy.ndarray`
The energy loss rates
Unit: [Gyr^-1]
"""
gamma = np.asarray(gamma)
z = COSMO.redshift(t)
B = self.magnetic_field(t) # [uG]
mass = self.mass_main(t)
n_th = helper.density_number_thermal(mass, z) # [cm^-3]
loss_ic = -4.32e-4 * gamma**2 * (1+z)**4
loss_syn = -4.10e-5 * gamma**2 * B**2
loss_coul = -3.79e4 * n_th * (1 + np.log(gamma/n_th) / 75)
return loss_ic + loss_syn + loss_coul
class RadioHaloAM(RadioHalo1M):
"""
Simulate the radio halo properties for a galaxy cluster with all its
on-going merger and past merger events taken into account.
Parameters
----------
M_obs : float
Cluster virial mass at the observation (simulation end) time.
Unit: [Msun]
z_obs : float
Redshift of the observation (simulation end) time.
M_main, M_sub : list[float]
List of main and sub cluster masses at each merger event,
from current to earlier time.
Unit: [Msun]
z_merger : list[float]
The redshifts at each merger event, from small to large.
merger_num : int
Number of merger events traced for the cluster.
"""
def __init__(self, M_obs, z_obs, M_main, M_sub, z_merger,
merger_num, configs=CONFIGS):
M_main = np.asarray(M_main[:merger_num])
M_sub = np.asarray(M_sub[:merger_num])
z_merger = np.asarray(z_merger[:merger_num])
super().__init__(M_obs=M_obs, z_obs=z_obs,
M_main=M_main, M_sub=M_sub,
z_merger=z_merger, configs=configs)
self.merger_num = merger_num
@property
def radius(self):
"""
The halo radius estimated by using the maximum turbulence radius.
Unit: [kpc]
"""
return self.f_radius * self.radius_turb_max
@property
@lru_cache()
def radius_turb_max(self):
"""
The maximum turbulence radius.
Unit: [kpc]
"""
return max([self.radius_turb(tm) for tm in self.t_merger])
def radius_turb_eff(self, t, use_last=True):
"""
Get the effective turbulence radius, i.e., the largest one if
multiple mergers are active at the given time.
Parameters
----------
use_last : bool
If ``True``, return the turbulence radius of the last merger
event when there is no active turbulence at the given time.
Otherwise, return 0.
Unit: [kpc]
"""
mergers = [(t, t+self.duration_turb(t), self.radius_turb(t))
for t in self.t_merger] # time decreasing
try:
r_eff = max([r for t1, t2, r in mergers if t >= t1 and t < t2])
except ValueError:
# No active turbulence at this time
if use_last:
r_eff = next(r for __, t2, r in mergers if t >= t2)
else:
r_eff = 0
return r_eff
@property
def t_begin(self):
"""
The cosmic time when the merger begins, i.e., the earliest merger.
Unit: [Gyr]
"""
return self.t_merger[-1]
def _merger_event(self, t):
"""
Return the most recent merger event happend before the given time,
i.e., the merger event that the given time locates in.
"""
idx = (self.t_merger > t).sum()
return {
"idx": idx,
"M_main": self.M_main[idx],
"M_sub": self.M_sub[idx],
"z": self.z_merger[idx],
"t": self.t_merger[idx],
}
def mass_merged(self, t):
"""
The mass of merged cluster at the given (cosmic) time.
Unit: [Msun]
"""
if t >= self.t_obs:
return self.M_obs
else:
merger = self._merger_event(t)
return (merger["M_main"] + merger["M_sub"])
def mass_sub(self, t):
"""
The mass of the sub cluster at the given (cosmic) time.
Unit: [Msun]
"""
merger = self._merger_event(t)
return merger["M_sub"]
def mass_main(self, t):
"""
Calculate the main cluster mass, which is assumed to grow along
the merger/accretion processes, at the given (cosmic) time.
Unit: [Msun]
"""
merger1 = self._merger_event(t)
idx1 = merger1["idx"]
mass1 = merger1["M_main"]
t1 = merger1["t"]
if idx1 == 0:
mass0 = self.M_obs
t0 = self.t_obs
else:
idx0 = idx1 - 1
mass0 = self.M_main[idx0]
t0 = self.t_merger[idx0]
rate = (mass0 - mass1) / (t0 - t1)
return (mass1 + rate * (t - t1))
def _merger_time(self, t):
"""
Determine the beginning time of the merger event that is doing
effective acceleration at the given time.
At a certain time, there may be multiple past merger events with
different turbulence durations (``tau_turb``) and acceleration
efficiencies (``tau_acc``). Therefore, multiple mergers can cover
the given time. The one with the largest acceleration efficiency
(i.e., smallest ``tau_acc``) is chosen and its beginning time is
returned. Otherwise, the most recent merger event happened before
the given time is chosen.
"""
mergers = [(tm, tm+self.duration_turb(tm), self.tau_acceleration(tm))
for tm in self.t_merger]
m_active = [(tm, tend, tau) for (tm, tend, tau) in mergers
if t >= tm and t < tend]
if m_active:
m_eff = min(m_active, key=lambda item: item[2])
return m_eff[0]
else:
m = self._merger_event(t)
return m["t"]
def _time_adjust(self):
"""
Determine the time points when spectrum adjustment is needed.
Different mergers generate turbulence in regions of different radius,
therefore, the accelerated spectrum needs appropriate adjustment.
Returns
-------
t_adj : list[float]
List of (cosmic) times when the adjustment is needed.
NOTE: May be empty, e.g., only one merger event.
Unit: [Gyr]
"""
mergers = [(t, t+self.duration_turb(t)) for t in self.t_merger]
t_begin = [t for t, __ in mergers]
t_end = [t for __, t in mergers]
tps = sorted(t_begin + t_end)
radii = [self.radius_turb_eff(t, use_last=False) for t in tps]
tinfo = {t: {"begin": t in t_begin, "end": t in t_end, "radius": r}
for t, r in zip(tps, radii)}
t_adj = []
for r1, r2, t in zip(radii, radii[1:], tps[1:]):
if np.isclose(r1, r2):
continue
ti = tinfo[t]
if ti["end"] and np.isclose(ti["radius"], 0):
continue
t_adj.append(t)
return t_adj
def _adjust_spectrum(self, spec_in, t, spec_ref):
"""
Adjust the electron spectrum to take into account the change of
turbulence region size. If the current turbulence radius is
smaller than the maximum turbulence radius, then dilute the
accelerated part of the spectrum according to the volume ratio.
Parameters
----------
spec_in : 1D `~numpy.ndarray`
The spectrum at the ending of the given acceleration period.
t : float
The corresponding time of the given spectrum ``spec_in``.
Unit: [Gyr]
spec_ref : 1D `~numpy.ndarray`
The spectrum at the beginning of the given acceleration period.
Returns
-------
spec : Adjusted spectrum.
"""
r = self.radius_turb_eff(t, use_last=True)
r_max = self.radius_turb_max
if np.isclose(r, r_max):
return spec_in
logger.debug("Adjusting the accelerated spectrum ...")
spec_diff = spec_in - spec_ref
idx = spec_diff > 0
spec = np.array(spec_ref)
spec[idx] += spec_diff[idx] * (r/r_max)**3
d = helper.density_number_electron(spec, self.gamma)
d_in = helper.density_number_electron(spec_in, self.gamma)
spec *= d_in / d
return spec
def calc_electron_spectrum(self, tstart=None, tstop=None, n0_e=None,
fiducial=False):
"""
Calculate the relativistic electron spectrum by solving the
Fokker-Planck equation.
Given that different mergers have different turbulence radii, the
spectrum needs appropriate adjustments to take this into account.
At the beginning of each merger, the accelerated part of the
spectrum (i.e., where the electron density increases compared to
last adjustment) is scaled according to the ratio of the previous
turbulence volume to the maximum turbulence volume, i.e., dilute
the accelerated spectrum to the maximum turbulence volume.
"""
if tstart is None:
tstart = self.t_begin
if tstop is None:
tstop = self.t_obs
if n0_e is None:
n0_e = self.electron_spec_init
if fiducial:
self._acceleration_disabled = True
self.fpsolver.tstep = self.time_step * 2 # To save time
logger.debug("Calculating the [fiducial] electron spectrum ...")
n_e = self.fpsolver.solve(u0=n0_e, tstart=tstart, tstop=tstop)
self._acceleration_disabled = False
self.fpsolver.tstep = self.time_step
return n_e
logger.debug("Calculating the electron spectrum ...")
tps = [self.t_begin] + self._time_adjust() + [self.t_obs]
n1_e = n0_e
for t1, t2 in zip(tps, tps[1:]):
if tstart >= t2 or tstop < t1:
continue
if tstart > t1:
t1 = tstart
if tstop < t2:
t2 = tstop
logger.debug("Time period: [%.2f, %.2f] [Gyr] ..." % (t1, t2))
n2_e = self.fpsolver.solve(u0=n1_e, tstart=t1, tstop=t2)
n2_e = self._adjust_spectrum(n2_e, t2, spec_ref=n1_e)
n1_e = n2_e
return n2_e
|