Remove obsolete scripts

24 files changed, 0 insertions, 2714 deletions

diff --git a/mod_ly/coolfunc_0.1-2.4_calc.sh b/mod_ly/coolfunc_0.1-2.4_calc.sh
deleted file mode 100755
index 7dc1a6a..0000000
--- a/mod_ly/coolfunc_0.1-2.4_calc.sh
+++ /dev/null
@@ -1,137 +0,0 @@
-#!/bin/sh
-#
-# unalias -a
-#
-###########################################################
-## Task:                                                 ##
-## Calc `cooling function' data according to             ##
-## given `temperature profile'                           ##
-##                                                       ##
-## NOTE:                                                 ##
-## given `tprofile': <radius> <temperature>              ##
-## calc `cooling function' by invoking `XSPEC'           ##
-## using model `wabs*apec'                               ##
-##                                                       ##
-## LIweitiaNux <liweitianux@gmail.com>                   ##
-## August 17, 2012                                       ##
-###########################################################
-
-## cmdline arguments {{{
-if [ $# -ne 5 ]; then
-    printf "usage:\n"
-    printf "    `basename $0` <tprofile> <avg_abund> <nH> <redshift> <coolfunc_outfile>\n"
-    exit 1
-fi
-base_path=`dirname $0`
-TPROFILE=$1
-ABUND_VAL=$2
-N_H=$3
-REDSHIFT=$4
-
-NORM=`$base_path/calc_distance $REDSHIFT|grep norm|awk '{print $2}'`
-echo $NORM
-
-COOLFUNC_DAT=$5
-COOLFUNC_DAT_RATIO=flux_cnt_ratio.txt
-
-if [ ! -r "${TPROFILE}" ]; then
-    printf "ERROR: given tprofile '${TPROFILE}' NOT accessiable\n"
-    exit 2
-fi
-[ -e "${COOLFUNC_DAT}" ] && rm -f ${COOLFUNC_DAT}
-[ -e "${COOLFUNC_DAT_RATIO}" ] && rm -f ${COOLFUNC_DAT_RATIO}
-## arguments }}}
-
-## specify variable name outside while loop
-## otherwise the inside vars invisible
-XSPEC_CF_XCM="_coolfunc_calc.xcm"
-[ -e "${XSPEC_CF_XCM}" ] && rm -f ${XSPEC_CF_XCM}
-
-## generate xspec script {{{
-cat >> ${XSPEC_CF_XCM} << _EOF_
-## XSPEC Tcl script
-## calc cooling function data
-##
-## generated by: `basename $0`
-## date: `date`
-
-set xs_return_results 1
-set xs_echo_script 0
-# set tcl_precision 12
-dummyrsp .01 100 4096
-## set basic data {{{
-set nh ${N_H}
-set redshift ${REDSHIFT}
-set abund_val ${ABUND_VAL}
-set norm ${NORM}
-## basic }}}
-
-## xspec related {{{
-# debug settings {{{
-chatter 0
-# debug }}}
-query yes
-abund grsa
-dummyrsp 0.3 11.0 1024
-# load model 'wabs*apec' to calc cooling function
-model wabs*apec & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & /*
-## xspec }}}
-
-## set input and output filename
-set tpro_fn "${TPROFILE}"
-set cf_fn "${COOLFUNC_DAT}"
-set cff_fn "${COOLFUNC_DAT_RATIO}"
-if { [ file exists \${cf_fn} ] } {
-    exec rm -fv \${cf_fn}
-}
-
-if { [ file exists \${cff_fn} ] } {
-    exec rm -fv \${cff_fn}
-}
-
-## open files
-set tpro_fd [ open \${tpro_fn} r ]
-set cf_fd [ open \${cf_fn} w ]
-set cff_fd [ open \${cff_fn} w ]
-
-## read data from tprofile line by line
-while { [ gets \${tpro_fd} tpro_line ] != -1 } {
-    # gets one line
-    scan \${tpro_line} "%f %f" radius temp_val
-    #puts "radius: \${radius}, temperature: \${temp_val}"
-    # set temperature value
-    newpar 2 \${temp_val}
-    # calc flux & tclout
-    flux 0.7 7.0
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" holder holder holder cf_data
-    #puts "cf_data: \${cf_data}"
-    puts \${cf_fd} "\${radius}    \${cf_data}"
-    flux 0.1 2.4
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" cff_data holder holder holder
-    puts \${cff_fd} "\${radius}   [expr \${cff_data}/\${cf_data}]"
-}
-
-## close opened files
-close \${tpro_fd}
-close \${cf_fd}
-close \${cff_fd}
-
-## exit
-tclexit
-_EOF_
-
-## extract xcm }}}
-
-## invoke xspec to calc
-printf "invoking XSPEC to calculate cooling function data ...\n"
-# xspec - ${XSPEC_CF_XCM}
-xspec - ${XSPEC_CF_XCM} > /dev/null
-
-## clean
-# if [ -e "${XSPEC_CF_XCM}" ]; then
-#     rm -f ${XSPEC_CF_XCM}
-# fi
-
-exit 0
diff --git a/mod_ly/coolfunc_0.1-2.4_calc_rs.sh b/mod_ly/coolfunc_0.1-2.4_calc_rs.sh
deleted file mode 100755
index 262e8ed..0000000
--- a/mod_ly/coolfunc_0.1-2.4_calc_rs.sh
+++ /dev/null
@@ -1,139 +0,0 @@
-#!/bin/sh
-#
-# unalias -a
-#
-###########################################################
-## Task:                                                 ##
-## Calc `cooling function' data according to             ##
-## given `temperature profile'                           ##
-##                                                       ##
-## NOTE:                                                 ##
-## given `tprofile': <radius> <temperature>              ##
-## calc `cooling function' by invoking `XSPEC'           ##
-## using model `wabs*apec'                               ##
-##                                                       ##
-## LIweitiaNux <liweitianux@gmail.com>                   ##
-## August 17, 2012                                       ##
-###########################################################
-
-## cmdline arguments {{{
-if [ $# -ne 5 ]; then
-    printf "usage:\n"
-    printf "    `basename $0` <tprofile> <avg_abund> <nH> <redshift> <coolfunc_outfile>\n"
-    exit 1
-fi
-base_path=`dirname $0`
-TPROFILE=$1
-ABUND_VAL=$2
-N_H=$3
-REDSHIFT=$4
-
-NORM=`$base_path/calc_distance $REDSHIFT|grep norm|awk '{print $2}'`
-echo $NORM
-
-COOLFUNC_DAT=$5
-COOLFUNC_DAT_RATIO=flux_cnt_ratio.txt
-
-if [ ! -r "${TPROFILE}" ]; then
-    printf "ERROR: given tprofile '${TPROFILE}' NOT accessiable\n"
-    exit 2
-fi
-[ -e "${COOLFUNC_DAT}" ] && rm -f ${COOLFUNC_DAT}
-[ -e "${COOLFUNC_DAT_RATIO}" ] && rm -f ${COOLFUNC_DAT_RATIO}
-## arguments }}}
-
-## specify variable name outside while loop
-## otherwise the inside vars invisible
-XSPEC_CF_XCM="_coolfunc_calc.xcm"
-[ -e "${XSPEC_CF_XCM}" ] && rm -f ${XSPEC_CF_XCM}
-
-## generate xspec script {{{
-cat >> ${XSPEC_CF_XCM} << _EOF_
-## XSPEC Tcl script
-## calc cooling function data
-##
-## generated by: `basename $0`
-## date: `date`
-
-set xs_return_results 1
-set xs_echo_script 0
-# set tcl_precision 12
-dummyrsp .01 100 4096
-## set basic data {{{
-set nh ${N_H}
-set redshift ${REDSHIFT}
-set abund_val ${ABUND_VAL}
-set norm ${NORM}
-## basic }}}
-
-## xspec related {{{
-# debug settings {{{
-chatter 0
-# debug }}}
-query yes
-abund grsa
-dummyrsp 0.3 11.0 1024
-# # load model 'wabs*apec' to calc cooling function
-# model wabs*apec & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & /*
-# model 'wabs*raymond'
-model wabs*raymond & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & /*
-## xspec }}}
-
-## set input and output filename
-set tpro_fn "${TPROFILE}"
-set cf_fn "${COOLFUNC_DAT}"
-set cff_fn "${COOLFUNC_DAT_RATIO}"
-if { [ file exists \${cf_fn} ] } {
-    exec rm -fv \${cf_fn}
-}
-
-if { [ file exists \${cff_fn} ] } {
-    exec rm -fv \${cff_fn}
-}
-
-## open files
-set tpro_fd [ open \${tpro_fn} r ]
-set cf_fd [ open \${cf_fn} w ]
-set cff_fd [ open \${cff_fn} w ]
-
-## read data from tprofile line by line
-while { [ gets \${tpro_fd} tpro_line ] != -1 } {
-    # gets one line
-    scan \${tpro_line} "%f %f" radius temp_val
-    #puts "radius: \${radius}, temperature: \${temp_val}"
-    # set temperature value
-    newpar 2 \${temp_val}
-    # calc flux & tclout
-    flux 0.7 7.0
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" holder holder holder cf_data
-    #puts "cf_data: \${cf_data}"
-    puts \${cf_fd} "\${radius}    \${cf_data}"
-    flux 0.1 2.4
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" cff_data holder holder holder
-    puts \${cff_fd} "\${radius}   [expr \${cff_data}/\${cf_data}]"
-}
-
-## close opened files
-close \${tpro_fd}
-close \${cf_fd}
-close \${cff_fd}
-
-## exit
-tclexit
-_EOF_
-
-## extract xcm }}}
-
-## invoke xspec to calc
-printf "invoking XSPEC to calculate cooling function data ...\n"
-# xspec - ${XSPEC_CF_XCM}
-xspec - ${XSPEC_CF_XCM} > /dev/null
-
-## clean
-# if [ -e "${XSPEC_CF_XCM}" ]; then
-#     rm -f ${XSPEC_CF_XCM}
-# fi
-
-exit 0
diff --git a/mod_ly/coolfunc_0.5-2_calc.sh b/mod_ly/coolfunc_0.5-2_calc.sh
deleted file mode 100755
index 889a4e3..0000000
--- a/mod_ly/coolfunc_0.5-2_calc.sh
+++ /dev/null
@@ -1,137 +0,0 @@
-#!/bin/sh
-#
-# unalias -a
-#
-###########################################################
-## Task:                                                 ##
-## Calc `cooling function' data according to             ##
-## given `temperature profile'                           ##
-##                                                       ##
-## NOTE:                                                 ##
-## given `tprofile': <radius> <temperature>              ##
-## calc `cooling function' by invoking `XSPEC'           ##
-## using model `wabs*apec'                               ##
-##                                                       ##
-## LIweitiaNux <liweitianux@gmail.com>                   ##
-## August 17, 2012                                       ##
-###########################################################
-
-## cmdline arguments {{{
-if [ $# -ne 5 ]; then
-    printf "usage:\n"
-    printf "    `basename $0` <tprofile> <avg_abund> <nH> <redshift> <coolfunc_outfile>\n"
-    exit 1
-fi
-base_path=`dirname $0`
-TPROFILE=$1
-ABUND_VAL=$2
-N_H=$3
-REDSHIFT=$4
-
-NORM=`$base_path/calc_distance $REDSHIFT|grep norm|awk '{print $2}'`
-echo $NORM
-
-COOLFUNC_DAT=$5
-COOLFUNC_DAT_RATIO=flux_cnt_ratio.txt
-
-if [ ! -r "${TPROFILE}" ]; then
-    printf "ERROR: given tprofile '${TPROFILE}' NOT accessiable\n"
-    exit 2
-fi
-[ -e "${COOLFUNC_DAT}" ] && rm -f ${COOLFUNC_DAT}
-[ -e "${COOLFUNC_DAT_RATIO}" ] && rm -f ${COOLFUNC_DAT_RATIO}
-## arguments }}}
-
-## specify variable name outside while loop
-## otherwise the inside vars invisible
-XSPEC_CF_XCM="_coolfunc_calc.xcm"
-[ -e "${XSPEC_CF_XCM}" ] && rm -f ${XSPEC_CF_XCM}
-
-## generate xspec script {{{
-cat >> ${XSPEC_CF_XCM} << _EOF_
-## XSPEC Tcl script
-## calc cooling function data
-##
-## generated by: `basename $0`
-## date: `date`
-
-set xs_return_results 1
-set xs_echo_script 0
-# set tcl_precision 12
-dummyrsp .01 100 4096
-## set basic data {{{
-set nh ${N_H}
-set redshift ${REDSHIFT}
-set abund_val ${ABUND_VAL}
-set norm ${NORM}
-## basic }}}
-
-## xspec related {{{
-# debug settings {{{
-chatter 0
-# debug }}}
-query yes
-abund grsa
-dummyrsp 0.3 11.0 1024
-# load model 'wabs*apec' to calc cooling function
-model wabs*apec & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & /*
-## xspec }}}
-
-## set input and output filename
-set tpro_fn "${TPROFILE}"
-set cf_fn "${COOLFUNC_DAT}"
-set cff_fn "${COOLFUNC_DAT_RATIO}"
-if { [ file exists \${cf_fn} ] } {
-    exec rm -fv \${cf_fn}
-}
-
-if { [ file exists \${cff_fn} ] } {
-    exec rm -fv \${cff_fn}
-}
-
-## open files
-set tpro_fd [ open \${tpro_fn} r ]
-set cf_fd [ open \${cf_fn} w ]
-set cff_fd [ open \${cff_fn} w ]
-
-## read data from tprofile line by line
-while { [ gets \${tpro_fd} tpro_line ] != -1 } {
-    # gets one line
-    scan \${tpro_line} "%f %f" radius temp_val
-    #puts "radius: \${radius}, temperature: \${temp_val}"
-    # set temperature value
-    newpar 2 \${temp_val}
-    # calc flux & tclout
-    flux 0.7 7.0
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" holder holder holder cf_data
-    #puts "cf_data: \${cf_data}"
-    puts \${cf_fd} "\${radius}    \${cf_data}"
-    flux 0.5 2.0
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" cff_data holder holder holder
-    puts \${cff_fd} "\${radius}   [expr \${cff_data}/\${cf_data}]"
-}
-
-## close opened files
-close \${tpro_fd}
-close \${cf_fd}
-close \${cff_fd}
-
-## exit
-tclexit
-_EOF_
-
-## extract xcm }}}
-
-## invoke xspec to calc
-printf "invoking XSPEC to calculate cooling function data ...\n"
-# xspec - ${XSPEC_CF_XCM}
-xspec - ${XSPEC_CF_XCM} > /dev/null
-
-## clean
-# if [ -e "${XSPEC_CF_XCM}" ]; then
-#     rm -f ${XSPEC_CF_XCM}
-# fi
-
-exit 0
diff --git a/mod_ly/coolfunc_0.5-2_calc_rs.sh b/mod_ly/coolfunc_0.5-2_calc_rs.sh
deleted file mode 100755
index 3d8933b..0000000
--- a/mod_ly/coolfunc_0.5-2_calc_rs.sh
+++ /dev/null
@@ -1,139 +0,0 @@
-#!/bin/sh
-#
-# unalias -a
-#
-###########################################################
-## Task:                                                 ##
-## Calc `cooling function' data according to             ##
-## given `temperature profile'                           ##
-##                                                       ##
-## NOTE:                                                 ##
-## given `tprofile': <radius> <temperature>              ##
-## calc `cooling function' by invoking `XSPEC'           ##
-## using model `wabs*apec'                               ##
-##                                                       ##
-## LIweitiaNux <liweitianux@gmail.com>                   ##
-## August 17, 2012                                       ##
-###########################################################
-
-## cmdline arguments {{{
-if [ $# -ne 5 ]; then
-    printf "usage:\n"
-    printf "    `basename $0` <tprofile> <avg_abund> <nH> <redshift> <coolfunc_outfile>\n"
-    exit 1
-fi
-base_path=`dirname $0`
-TPROFILE=$1
-ABUND_VAL=$2
-N_H=$3
-REDSHIFT=$4
-
-NORM=`$base_path/calc_distance $REDSHIFT|grep norm|awk '{print $2}'`
-echo $NORM
-
-COOLFUNC_DAT=$5
-COOLFUNC_DAT_RATIO=flux_cnt_ratio.txt
-
-if [ ! -r "${TPROFILE}" ]; then
-    printf "ERROR: given tprofile '${TPROFILE}' NOT accessiable\n"
-    exit 2
-fi
-[ -e "${COOLFUNC_DAT}" ] && rm -f ${COOLFUNC_DAT}
-[ -e "${COOLFUNC_DAT_RATIO}" ] && rm -f ${COOLFUNC_DAT_RATIO}
-## arguments }}}
-
-## specify variable name outside while loop
-## otherwise the inside vars invisible
-XSPEC_CF_XCM="_coolfunc_calc.xcm"
-[ -e "${XSPEC_CF_XCM}" ] && rm -f ${XSPEC_CF_XCM}
-
-## generate xspec script {{{
-cat >> ${XSPEC_CF_XCM} << _EOF_
-## XSPEC Tcl script
-## calc cooling function data
-##
-## generated by: `basename $0`
-## date: `date`
-
-set xs_return_results 1
-set xs_echo_script 0
-# set tcl_precision 12
-dummyrsp .01 100 4096
-## set basic data {{{
-set nh ${N_H}
-set redshift ${REDSHIFT}
-set abund_val ${ABUND_VAL}
-set norm ${NORM}
-## basic }}}
-
-## xspec related {{{
-# debug settings {{{
-chatter 0
-# debug }}}
-query yes
-abund grsa
-dummyrsp 0.3 11.0 1024
-# # load model 'wabs*apec' to calc cooling function
-# model wabs*apec & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & /*
-# model 'wabs*raymond'
-model wabs*raymond & \${nh} & 1.0 & \${abund_val} & \${redshift} & \${norm} & /*
-## xspec }}}
-
-## set input and output filename
-set tpro_fn "${TPROFILE}"
-set cf_fn "${COOLFUNC_DAT}"
-set cff_fn "${COOLFUNC_DAT_RATIO}"
-if { [ file exists \${cf_fn} ] } {
-    exec rm -fv \${cf_fn}
-}
-
-if { [ file exists \${cff_fn} ] } {
-    exec rm -fv \${cff_fn}
-}
-
-## open files
-set tpro_fd [ open \${tpro_fn} r ]
-set cf_fd [ open \${cf_fn} w ]
-set cff_fd [ open \${cff_fn} w ]
-
-## read data from tprofile line by line
-while { [ gets \${tpro_fd} tpro_line ] != -1 } {
-    # gets one line
-    scan \${tpro_line} "%f %f" radius temp_val
-    #puts "radius: \${radius}, temperature: \${temp_val}"
-    # set temperature value
-    newpar 2 \${temp_val}
-    # calc flux & tclout
-    flux 0.7 7.0
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" holder holder holder cf_data
-    #puts "cf_data: \${cf_data}"
-    puts \${cf_fd} "\${radius}    \${cf_data}"
-    flux 0.5 2.0
-    tclout flux 1
-    scan \${xspec_tclout} "%f %f %f %f" cff_data holder holder holder
-    puts \${cff_fd} "\${radius}   [expr \${cff_data}/\${cf_data}]"
-}
-
-## close opened files
-close \${tpro_fd}
-close \${cf_fd}
-close \${cff_fd}
-
-## exit
-tclexit
-_EOF_
-
-## extract xcm }}}
-
-## invoke xspec to calc
-printf "invoking XSPEC to calculate cooling function data ...\n"
-# xspec - ${XSPEC_CF_XCM}
-xspec - ${XSPEC_CF_XCM} > /dev/null
-
-## clean
-# if [ -e "${XSPEC_CF_XCM}" ]; then
-#     rm -f ${XSPEC_CF_XCM}
-# fi
-
-exit 0
diff --git a/mod_ly/extract_tcool.py b/mod_ly/extract_tcool.py
deleted file mode 100755
index 05c836b..0000000
--- a/mod_ly/extract_tcool.py
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/usr/bin/env python
-
-import sys
-rcool=float(sys.argv[1])
-
-for l in open('cooling_time.dat'):
-    r,t=l.split()
-    r=float(r)
-    t=float(t)
-    if r>rcool:
-        print("cooling time at %f kpc=%f Gyr"%(rcool,t))
-        print("rcool= %f kpc" % rcool)
-        print("cooling_time= %f Gyr @ %f kpc" % (t,rcool))
-        sys.exit(0)
diff --git a/mod_ly/fit_beta_nfw_mass_profile.sh b/mod_ly/fit_beta_nfw_mass_profile.sh
deleted file mode 100755
index 8da6070..0000000
--- a/mod_ly/fit_beta_nfw_mass_profile.sh
+++ /dev/null
@@ -1,235 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-printf "da= ${da}\n"
-printf "dl= ${dl}\n"
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp
-$base_path/fit_beta_sbp $sbp_cfg 2> /dev/null
-mv -fv beta_param.txt beta_param_center.txt
-cat beta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-mv -fv rho_fit.dat rho_fit_center.dat
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-#exit 233
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-printf "rcool= ${rcool}\n"
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    $base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-    exit 0
-fi
-## center value }}}
-
-# clean previous files
-rm -f summary_shuffle_mass_profile.qdp
-rm -f summary_overdensity.qdp
-rm -f summary_mass_profile.qdp
-rm -f summary_gas_mass_profile.qdp
-
-## count
-COUNT=1
-
-#100 times of Monte-carlo simulation to determine error
-#just repeat above steps
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-for i in `seq 1 100`; do
-    # echo $t_data_file
-    $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat
-    $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat
-    # t_data_file=temp_shuffled_t.dat
-#exit
-
-    if [ "$t_profile_type" = "zyy" ]; then
-	$base_path/fit_zyy_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
-	mv -f zyy_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "m0603246" ]; then
-	$base_path/fit_m0603246 temp_shuffled_t.dat $cm_per_pixel
-	mv -f m0603246_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "wang2012" ]; then
-	$base_path/fit_wang2012_model temp_shuffled_t.dat $t_param_file $cm_per_pixel 2> /dev/null
-        mv -f wang2012_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "allen" ]; then
-	$base_path/fit_allen_model temp_shuffled_t.dat $cm_per_pixel
-	mv -f allen_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "zzl" ]; then
-        $base_path/fit_zzl_model temp_shuffled_t.dat $t_param_file
-        mv -f zzl_dump.qdp ${T_file}
-    else
-        printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-        exit 10
-    fi
-
-#exit
-    : > temp_sbp.cfg
-    
-    cat $sbp_cfg | while read l; do
-        if echo $l | grep -q 'sbp_file'; then
-            echo "sbp_file temp_shuffled_sbp.dat" >> temp_sbp.cfg
-        elif echo $l | grep -q 'T_file'; then
-            echo "T_file ${T_file}" >> temp_sbp.cfg
-        else
-            echo $l >> temp_sbp.cfg
-        fi
-    done
-
-    ## count
-    printf "## ${COUNT} ##\n"
-    COUNT=`expr ${COUNT} + 1`
-    printf "## `pwd` ##\n"
-    $base_path/coolfunc_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-
-    # single-beta model
-    $base_path/fit_beta_sbp temp_sbp.cfg 2> /dev/null
-    [ -r "beta_param.txt" ] && cat beta_param.txt
-    $base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-    cat nfw_dump.qdp >> summary_mass_profile.qdp
-    echo "no no no" >> summary_mass_profile.qdp
-
-    cat overdensity.qdp >> summary_overdensity.qdp
-    echo "no no no" >> summary_overdensity.qdp
-
-    cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp
-    echo "no no no" >> summary_gas_mass_profile.qdp
-
-done        # end `while'
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-
-#analys the errors
-printf "\n+++++++++++++++ RESULTS (single-beta) +++++++++++++++\n"
-RESULT="results_mrl.txt"
-[ -e "${RESULT}" ] && mv -fv ${RESULT} ${RESULT}_bak
-
-$base_path/analyze_mass_profile.py 200 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 1500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 2500 | tee -a ${RESULT}
-
-R200_VAL=`grep '^r200' ${RESULT} | awk '{ print $2 }'`
-R500_VAL=`grep '^r500' ${RESULT} | awk '{ print $2 }'`
-printf "\n## R200: ${R200_VAL}, R500: ${R500_VAL}\n"
-L200=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R200_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R500_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200= ${L200} erg/s\n" | tee -a ${RESULT}
-printf "L500= ${L500} erg/s\n" | tee -a ${RESULT}
-$base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n"
-
diff --git a/mod_ly/fit_beta_nfw_mass_profile2.sh b/mod_ly/fit_beta_nfw_mass_profile2.sh
deleted file mode 100755
index 87f2b12..0000000
--- a/mod_ly/fit_beta_nfw_mass_profile2.sh
+++ /dev/null
@@ -1,235 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-printf "da= ${da}\n"
-printf "dl= ${dl}\n"
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp
-$base_path/fit_beta_sbp2 $sbp_cfg 2> /dev/null
-mv -fv beta_param.txt beta_param_center.txt
-cat beta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-mv -fv rho_fit.dat rho_fit_center.dat
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-#exit 233
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-printf "rcool= ${rcool}\n"
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    $base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-    exit 0
-fi
-## center value }}}
-
-# clean previous files
-rm -f summary_shuffle_mass_profile.qdp
-rm -f summary_overdensity.qdp
-rm -f summary_mass_profile.qdp
-rm -f summary_gas_mass_profile.qdp
-
-## count
-COUNT=1
-
-#100 times of Monte-carlo simulation to determine error
-#just repeat above steps
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-for i in `seq 1 100`; do
-    # echo $t_data_file
-    $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat
-    $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat
-    # t_data_file=temp_shuffled_t.dat
-#exit
-
-    if [ "$t_profile_type" = "zyy" ]; then
-	$base_path/fit_zyy_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
-	mv -f zyy_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "m0603246" ]; then
-	$base_path/fit_m0603246 temp_shuffled_t.dat $cm_per_pixel
-	mv -f m0603246_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "wang2012" ]; then
-	$base_path/fit_wang2012_model temp_shuffled_t.dat $t_param_file $cm_per_pixel 2> /dev/null
-        mv -f wang2012_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "allen" ]; then
-	$base_path/fit_allen_model temp_shuffled_t.dat $cm_per_pixel
-	mv -f allen_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "zzl" ]; then
-        $base_path/fit_zzl_model temp_shuffled_t.dat $t_param_file
-        mv -f zzl_dump.qdp ${T_file}
-    else
-        printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-        exit 10
-    fi
-
-#exit
-    : > temp_sbp.cfg
-    
-    cat $sbp_cfg | while read l; do
-        if echo $l | grep -q 'sbp_file'; then
-            echo "sbp_file temp_shuffled_sbp.dat" >> temp_sbp.cfg
-        elif echo $l | grep -q 'T_file'; then
-            echo "T_file ${T_file}" >> temp_sbp.cfg
-        else
-            echo $l >> temp_sbp.cfg
-        fi
-    done
-
-    ## count
-    printf "## ${COUNT} ##\n"
-    COUNT=`expr ${COUNT} + 1`
-    printf "## `pwd` ##\n"
-    $base_path/coolfunc_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-
-    # single-beta model
-    $base_path/fit_beta_sbp2 temp_sbp.cfg 2> /dev/null
-    [ -r "beta_param.txt" ] && cat beta_param.txt
-    $base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-    cat nfw_dump.qdp >> summary_mass_profile.qdp
-    echo "no no no" >> summary_mass_profile.qdp
-
-    cat overdensity.qdp >> summary_overdensity.qdp
-    echo "no no no" >> summary_overdensity.qdp
-
-    cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp
-    echo "no no no" >> summary_gas_mass_profile.qdp
-
-done        # end `while'
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-
-#analys the errors
-printf "\n+++++++++++++++ RESULTS (single-beta) +++++++++++++++\n"
-RESULT="results_mrl.txt"
-[ -e "${RESULT}" ] && mv -fv ${RESULT} ${RESULT}_bak
-
-$base_path/analyze_mass_profile.py 200 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 1500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 2500 | tee -a ${RESULT}
-
-R200_VAL=`grep '^r200' ${RESULT} | awk '{ print $2 }'`
-R500_VAL=`grep '^r500' ${RESULT} | awk '{ print $2 }'`
-printf "\n## R200: ${R200_VAL}, R500: ${R500_VAL}\n"
-L200=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R200_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R500_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200= ${L200} erg/s\n" | tee -a ${RESULT}
-printf "L500= ${L500} erg/s\n" | tee -a ${RESULT}
-$base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n"
-
diff --git a/mod_ly/fit_beta_nfw_mass_profile_simple.sh b/mod_ly/fit_beta_nfw_mass_profile_simple.sh
deleted file mode 100755
index dc4fd3c..0000000
--- a/mod_ly/fit_beta_nfw_mass_profile_simple.sh
+++ /dev/null
@@ -1,135 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ] || [ ! -r "${radius_sbp_file}" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp
-$base_path/fit_beta_sbp $sbp_cfg 2> /dev/null
-mv -fv beta_param.txt beta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    exit 0
-fi
-## center value }}}
-
-exit 0
-
diff --git a/mod_ly/fit_dbeta_nfw_mass_profile.sh b/mod_ly/fit_dbeta_nfw_mass_profile.sh
deleted file mode 100755
index be0404f..0000000
--- a/mod_ly/fit_dbeta_nfw_mass_profile.sh
+++ /dev/null
@@ -1,235 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-printf "da= ${da}\n"
-printf "dl= ${dl}\n"
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp (double-beta)
-$base_path/fit_dbeta_sbp $sbp_cfg 2> /dev/null
-mv -fv dbeta_param.txt dbeta_param_center.txt
-cat dbeta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-mv -fv rho_fit.dat rho_fit_center.dat
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-#exit 233
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-printf "rcool= ${rcool}\n"
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    $base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-    exit 0
-fi
-## center value }}}
-
-# clean previous files
-rm -f summary_shuffle_mass_profile.qdp
-rm -f summary_overdensity.qdp
-rm -f summary_mass_profile.qdp
-rm -f summary_gas_mass_profile.qdp
-
-## count
-COUNT=1
-
-#100 times of Monte-carlo simulation to determine error
-#just repeat above steps
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-for i in `seq 1 100`; do
-    # echo $t_data_file
-    $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat
-    $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat
-    # t_data_file=temp_shuffled_t.dat
-#exit
-
-    if [ "$t_profile_type" = "zyy" ]; then
-	$base_path/fit_zyy_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
-	mv -f zyy_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "m0603246" ]; then
-	$base_path/fit_m0603246 temp_shuffled_t.dat $cm_per_pixel
-	mv -f m0603246_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "wang2012" ]; then
-	$base_path/fit_wang2012_model temp_shuffled_t.dat $t_param_file $cm_per_pixel 2> /dev/null
-        mv -f wang2012_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "allen" ]; then
-	$base_path/fit_allen_model temp_shuffled_t.dat $cm_per_pixel
-	mv -f allen_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "zzl" ]; then
-        $base_path/fit_zzl_model temp_shuffled_t.dat $t_param_file
-        mv -f zzl_dump.qdp ${T_file}
-    else
-        printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-        exit 10
-    fi
-
-#exit
-    : > temp_sbp.cfg
-    
-    cat $sbp_cfg | while read l; do
-        if echo $l | grep -q 'sbp_file'; then
-            echo "sbp_file temp_shuffled_sbp.dat" >> temp_sbp.cfg
-        elif echo $l | grep -q 'T_file'; then
-            echo "T_file ${T_file}" >> temp_sbp.cfg
-        else
-            echo $l >> temp_sbp.cfg
-        fi
-    done
-
-    ## count
-    printf "## ${COUNT} ##\n"
-    COUNT=`expr ${COUNT} + 1`
-    printf "## `pwd` ##\n"
-    $base_path/coolfunc_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-
-    # double-beta model
-    $base_path/fit_dbeta_sbp temp_sbp.cfg 2> /dev/null
-    [ -r "dbeta_param.txt" ] && cat dbeta_param.txt
-    $base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-    cat nfw_dump.qdp >> summary_mass_profile.qdp
-    echo "no no no" >> summary_mass_profile.qdp
-
-    cat overdensity.qdp >> summary_overdensity.qdp
-    echo "no no no" >> summary_overdensity.qdp
-
-    cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp
-    echo "no no no" >> summary_gas_mass_profile.qdp
-
-done        # end `while'
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-
-#analys the errors
-printf "\n+++++++++++++++ RESULTS (double-beta) +++++++++++++++\n"
-RESULT="results_dbeta_mrl.txt"
-[ -e "${RESULT}" ] && mv -fv ${RESULT} ${RESULT}_bak
-
-$base_path/analyze_mass_profile.py 200 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 1500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 2500 | tee -a ${RESULT}
-
-R200_VAL=`grep '^r200' ${RESULT} | awk '{ print $2 }'`
-R500_VAL=`grep '^r500' ${RESULT} | awk '{ print $2 }'`
-printf "\n## R200: ${R200_VAL}, R500: ${R500_VAL}\n"
-L200=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R200_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R500_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200= ${L200} erg/s\n" | tee -a ${RESULT}
-printf "L500= ${L500} erg/s\n" | tee -a ${RESULT}
-$base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n"
-
diff --git a/mod_ly/fit_dbeta_nfw_mass_profile2.sh b/mod_ly/fit_dbeta_nfw_mass_profile2.sh
deleted file mode 100755
index 13a78dd..0000000
--- a/mod_ly/fit_dbeta_nfw_mass_profile2.sh
+++ /dev/null
@@ -1,235 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-printf "da= ${da}\n"
-printf "dl= ${dl}\n"
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp (double-beta)
-$base_path/fit_dbeta_sbp2 $sbp_cfg 2> /dev/null
-mv -fv dbeta_param.txt dbeta_param_center.txt
-cat dbeta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-mv -fv rho_fit.dat rho_fit_center.dat
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-#exit 233
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-printf "rcool= ${rcool}\n"
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    $base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-    exit 0
-fi
-## center value }}}
-
-# clean previous files
-rm -f summary_shuffle_mass_profile.qdp
-rm -f summary_overdensity.qdp
-rm -f summary_mass_profile.qdp
-rm -f summary_gas_mass_profile.qdp
-
-## count
-COUNT=1
-
-#100 times of Monte-carlo simulation to determine error
-#just repeat above steps
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-for i in `seq 1 100`; do
-    # echo $t_data_file
-    $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat
-    $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat
-    # t_data_file=temp_shuffled_t.dat
-#exit
-
-    if [ "$t_profile_type" = "zyy" ]; then
-	$base_path/fit_zyy_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
-	mv -f zyy_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "m0603246" ]; then
-	$base_path/fit_m0603246 temp_shuffled_t.dat $cm_per_pixel
-	mv -f m0603246_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "wang2012" ]; then
-	$base_path/fit_wang2012_model temp_shuffled_t.dat $t_param_file $cm_per_pixel 2> /dev/null
-        mv -f wang2012_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "allen" ]; then
-	$base_path/fit_allen_model temp_shuffled_t.dat $cm_per_pixel
-	mv -f allen_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "zzl" ]; then
-        $base_path/fit_zzl_model temp_shuffled_t.dat $t_param_file
-        mv -f zzl_dump.qdp ${T_file}
-    else
-        printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-        exit 10
-    fi
-
-#exit
-    : > temp_sbp.cfg
-    
-    cat $sbp_cfg | while read l; do
-        if echo $l | grep -q 'sbp_file'; then
-            echo "sbp_file temp_shuffled_sbp.dat" >> temp_sbp.cfg
-        elif echo $l | grep -q 'T_file'; then
-            echo "T_file ${T_file}" >> temp_sbp.cfg
-        else
-            echo $l >> temp_sbp.cfg
-        fi
-    done
-
-    ## count
-    printf "## ${COUNT} ##\n"
-    COUNT=`expr ${COUNT} + 1`
-    printf "## `pwd` ##\n"
-    $base_path/coolfunc_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-
-    # double-beta model
-    $base_path/fit_dbeta_sbp2 temp_sbp.cfg 2> /dev/null
-    [ -r "dbeta_param.txt" ] && cat dbeta_param.txt
-    $base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-    cat nfw_dump.qdp >> summary_mass_profile.qdp
-    echo "no no no" >> summary_mass_profile.qdp
-
-    cat overdensity.qdp >> summary_overdensity.qdp
-    echo "no no no" >> summary_overdensity.qdp
-
-    cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp
-    echo "no no no" >> summary_gas_mass_profile.qdp
-
-done        # end `while'
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-
-#analys the errors
-printf "\n+++++++++++++++ RESULTS (double-beta) +++++++++++++++\n"
-RESULT="results_dbeta_mrl.txt"
-[ -e "${RESULT}" ] && mv -fv ${RESULT} ${RESULT}_bak
-
-$base_path/analyze_mass_profile.py 200 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 1500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 2500 | tee -a ${RESULT}
-
-R200_VAL=`grep '^r200' ${RESULT} | awk '{ print $2 }'`
-R500_VAL=`grep '^r500' ${RESULT} | awk '{ print $2 }'`
-printf "\n## R200: ${R200_VAL}, R500: ${R500_VAL}\n"
-L200=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R200_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R500_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200= ${L200} erg/s\n" | tee -a ${RESULT}
-printf "L500= ${L500} erg/s\n" | tee -a ${RESULT}
-$base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n"
-
diff --git a/mod_ly/fit_dbeta_nfw_mass_profile_simple.sh b/mod_ly/fit_dbeta_nfw_mass_profile_simple.sh
deleted file mode 100755
index 44999e3..0000000
--- a/mod_ly/fit_dbeta_nfw_mass_profile_simple.sh
+++ /dev/null
@@ -1,135 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp (double-beta)
-$base_path/fit_dbeta_sbp $sbp_cfg 2> /dev/null
-mv -fv dbeta_param.txt dbeta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    exit 0
-fi
-## center value }}}
-
-exit 0
-
diff --git a/mod_ly/luminosity_0.1-2.4.sh b/mod_ly/luminosity_0.1-2.4.sh
deleted file mode 100755
index 91c94c1..0000000
--- a/mod_ly/luminosity_0.1-2.4.sh
+++ /dev/null
@@ -1,77 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 1 ]; then
-    echo "Usage: $0 <cfg_file>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-read -p "R200:" R200
-read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.1-2.4_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.1-2.4_cnt_ratio_center.txt
-
-L200_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.1-2.4= ${L200_flux0124} erg/s\n"
-printf "L500_0.1-2.4= ${L500_flux0124} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.1-2.4_check.sh b/mod_ly/luminosity_0.1-2.4_check.sh
deleted file mode 100755
index 6614446..0000000
--- a/mod_ly/luminosity_0.1-2.4_check.sh
+++ /dev/null
@@ -1,80 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 3 ]; then
-    echo "Usage: $0 <cfg_file> <R200> <R500>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-#printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-#printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-#printf "## use configuration file: \`${cfg_file}'\n"
-R200=$2
-R500=$3
-
-# read -p "R200:" R200
-# read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-# abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-read -p "> abund: " abund
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-# printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-[ -e "flux_cnt_ratio.txt" ] && mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-[ -e "flux_cnt_ratio_center.txt" ] && mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.1-2.4_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.1-2.4_cnt_ratio_center.txt
-
-L200_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.1-2.4= ${L200_flux0124} erg/s\n"
-printf "L500_0.1-2.4= ${L500_flux0124} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.1-2.4_lwt.sh b/mod_ly/luminosity_0.1-2.4_lwt.sh
deleted file mode 100755
index 125bfc7..0000000
--- a/mod_ly/luminosity_0.1-2.4_lwt.sh
+++ /dev/null
@@ -1,79 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 3 ]; then
-    echo "Usage: $0 <cfg_file> <R200> <R500>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-#printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-#printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-#printf "## use configuration file: \`${cfg_file}'\n"
-R200=$2
-R500=$3
-
-# read -p "R200:" R200
-# read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-# printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-[ -e "flux_cnt_ratio.txt" ] && mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-[ -e "flux_cnt_ratio_center.txt" ] && mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.1-2.4_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.1-2.4_cnt_ratio_center.txt
-
-L200_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.1-2.4= ${L200_flux0124} erg/s\n"
-printf "L500_0.1-2.4= ${L500_flux0124} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.1-2.4_lwt_rs.sh b/mod_ly/luminosity_0.1-2.4_lwt_rs.sh
deleted file mode 100755
index 2e4d7cf..0000000
--- a/mod_ly/luminosity_0.1-2.4_lwt_rs.sh
+++ /dev/null
@@ -1,79 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 3 ]; then
-    echo "Usage: $0 <cfg_file> <R200> <R500>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-#printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-#printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-#printf "## use configuration file: \`${cfg_file}'\n"
-R200=$2
-R500=$3
-
-# read -p "R200:" R200
-# read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-# printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-[ -e "flux_cnt_ratio.txt" ] && mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-[ -e "flux_cnt_ratio_center.txt" ] && mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.1-2.4_calc_rs.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.1-2.4_cnt_ratio_center.txt
-
-L200_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.1-2.4= ${L200_flux0124} erg/s\n"
-printf "L500_0.1-2.4= ${L500_flux0124} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.1-2.4_orig.sh b/mod_ly/luminosity_0.1-2.4_orig.sh
deleted file mode 100755
index 531a2b1..0000000
--- a/mod_ly/luminosity_0.1-2.4_orig.sh
+++ /dev/null
@@ -1,72 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 1 ]; then
-    echo "Usage: $0 <cfg_file>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-read -p "R200:" R200
-read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.1-2.4_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.1-2.4_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.1-2.4_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-mv -fv flux_cnt_ratio.txt flux_0.1-2.4_cnt_ratio.txt
-
-RESULT="$HOME/data_tot/luminosity.txt"
-
-L200_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0124=`$base_path/calc_lx $radius_sbp_file flux_0.1-2.4_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "`pwd -P` : \n" | tee -a ${RESULT}   
-printf "L200_0.1-2.4= ${L200_flux0124} erg/s\n" | tee -a ${RESULT}
-printf "L500_0.1-2.4= ${L500_flux0124} erg/s\n" | tee -a ${RESULT}
diff --git a/mod_ly/luminosity_0.5-2.sh b/mod_ly/luminosity_0.5-2.sh
deleted file mode 100755
index f3ed643..0000000
--- a/mod_ly/luminosity_0.5-2.sh
+++ /dev/null
@@ -1,77 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 1 ]; then
-    echo "Usage: $0 <cfg_file>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-read -p "R200:" R200
-read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.5-2_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.5-2_cnt_ratio_center.txt
-
-L200_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.5-2= ${L200_flux0520} erg/s\n"
-printf "L500_0.5-2= ${L500_flux0520} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.5-2_lwt.sh b/mod_ly/luminosity_0.5-2_lwt.sh
deleted file mode 100755
index 8fe5f44..0000000
--- a/mod_ly/luminosity_0.5-2_lwt.sh
+++ /dev/null
@@ -1,79 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 3 ]; then
-    echo "Usage: $0 <cfg_file> <R200> <R500>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-#printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-#printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-#printf "## use configuration file: \`${cfg_file}'\n"
-R200=$2
-R500=$3
-
-#read -p "R200:" R200
-#read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-#printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-[ -e "flux_cnt_ratio.txt" ] && mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-[ -e "flux_cnt_ratio_center.txt" ] && mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.5-2_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.5-2_cnt_ratio_center.txt
-
-L200_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.5-2= ${L200_flux0520} erg/s\n"
-printf "L500_0.5-2= ${L500_flux0520} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.5-2_lwt_rs.sh b/mod_ly/luminosity_0.5-2_lwt_rs.sh
deleted file mode 100755
index 5019013..0000000
--- a/mod_ly/luminosity_0.5-2_lwt_rs.sh
+++ /dev/null
@@ -1,79 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 3 ]; then
-    echo "Usage: $0 <cfg_file> <R200> <R500>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-#printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-#printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-#printf "## use configuration file: \`${cfg_file}'\n"
-R200=$2
-R500=$3
-
-#read -p "R200:" R200
-#read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-#printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-[ -e "flux_cnt_ratio.txt" ] && mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-[ -e "flux_cnt_ratio_center.txt" ] && mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.5-2_calc_rs.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.5-2_cnt_ratio_center.txt
-
-L200_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200_0.5-2= ${L200_flux0520} erg/s\n"
-printf "L500_0.5-2= ${L500_flux0520} erg/s\n"
-
diff --git a/mod_ly/luminosity_0.5-2_orig.sh b/mod_ly/luminosity_0.5-2_orig.sh
deleted file mode 100755
index 228d2c0..0000000
--- a/mod_ly/luminosity_0.5-2_orig.sh
+++ /dev/null
@@ -1,72 +0,0 @@
-#!/bin/sh
-
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -ne 1 ]; then
-    echo "Usage: $0 <cfg_file>"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-cfg_file="$1"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-read -p "R200:" R200
-read -p "R500:" R500
-
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-#t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-## sbp {{{
-#sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-mv -fv flux_cnt_ratio.txt flux_bolo_cnt_ratio.txt
-mv -fv flux_cnt_ratio_center.txt flux_bolo_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.5-2_calc.sh ${T_file} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_0.5-2_cnt_ratio_center.txt
-
-$base_path/coolfunc_0.5-2_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-mv -fv flux_cnt_ratio.txt flux_0.5-2_cnt_ratio.txt
-
-RESULT="$HOME/data_tot/luminosity.txt"
-
-L200_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R200} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500_flux0520=`$base_path/calc_lx $radius_sbp_file flux_0.5-2_cnt_ratio_center.txt $z ${R500} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "`pwd -P` : \n" | tee -a ${RESULT}
-printf "L200_0.5-2= ${L200_flux0520} erg/s\n" | tee -a ${RESULT}
-printf "L500_0.5-2= ${L500_flux0520} erg/s\n" | tee -a ${RESULT}
diff --git a/mod_ly/lx_simple_gxy.sh b/mod_ly/lx_simple_gxy.sh
deleted file mode 100755
index 7ce581a..0000000
--- a/mod_ly/lx_simple_gxy.sh
+++ /dev/null
@@ -1,104 +0,0 @@
-#!/bin/sh
-#
-unalias -a
-export LC_COLLATE=C
-# fix path for python
-export PATH="/usr/bin:$PATH"
-###########################################################
-## calc lx, based on `calc_lx', modified for gxy         ##
-##                                                       ##
-## LIweitiaNux <liweitianux@gmail.com>                   ##
-## November 3, 2012                                      ##
-###########################################################
-
-## usage, `path_conffile' is the configuration file
-## which contains the `path' to each `repro/mass' directory
-if [ $# -eq 1 ]; then
-    # process dir
-    MDIR="$1"
-elif [ $# -eq 2 ]; then
-    # process dir
-    MDIR="$1"
-    # separate log file
-    MAIN_LOG="`pwd -P`/`basename $2`"
-else
-    printf "usage:\n"
-    printf "    `basename $0` <mass_dir> [ <logfile> ]\n"
-    printf "\nNOTE:\n"
-    printf "   script cannot handle \`~' in path\n"
-    exit 1
-fi
-
-if [ ! -d "${MDIR}" ]; then
-    printf "## ERROR: given \`${MDIR}' not a directory\n"
-    exit 2
-fi
-if [ -d "${MAIN_LOG}" ]; then
-    printf "## ERROR: given \`${MAIN_LOG}' IS a file\n"
-    exit 3
-fi
-
-## set the path to the script {{{
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-LX1_SCRIPT="$base_path/luminosity_0.1-2.4_lwt.sh"
-LX2_SCRIPT="$base_path/luminosity_0.5-2_lwt.sh"
-if [ ! -e "${LX1_SCRIPT}" ] || [ ! -e "${LX2_SCRIPT}" ]; then
-    printf "ERROR: \`LX_SCRIPT' not exist\n"
-    exit 250
-fi
-## script path }}}
-
-# result lines
-RES_LINE=100
-
-# process
-cd ${MDIR}
-printf "Entered dir: \``pwd`'\n"
-# mass fitting conf
-MCONF="`ls fitting_mass.conf global.cfg 2> /dev/null | head -n 1`"
-if [ ! -r "${MCONF}" ]; then
-    printf "ERROR: main configuration file not accessiable\n"
-    exit 10
-else
-    printf "## use main configuration file: \`${MCONF}'\n"
-    LOGFILE="lx_gxy_`date '+%Y%m%d%H'`.log"
-    [ -e "${LOGFILE}" ] && mv -fv ${LOGFILE} ${LOGFILE}_bak
-    TOLOG="tee -a ${LOGFILE}"
-    printf "## use logfile: \`${LOGFILE}'\n"
-    if [ ! -z "${MAIN_LOG}" ]; then
-        printf "## separate main logfile: \`${MAIN_LOG}'\n"
-    fi
-    printf "## working directory: \``pwd -P`'\n" | ${TOLOG}
-    printf "## use configuration files: \`${MCONF}'\n" | ${TOLOG}
-    # fitting_mass logfile, get R500 from it
-    MLOG=`ls ${MCONF%.[confgCONFG]*}*.log | tail -n 1`
-    if [ ! -r "${MLOG}" ]; then
-        printf "## ERROR: mass log file not accessiable\n"
-        exit 20
-    fi
-    R500_VAL=`tail -n ${RES_LINE} ${MLOG} | grep '^r500' | head -n 1 | awk '{ print $2 }'`
-    R200_VAL=`tail -n ${RES_LINE} ${MLOG} | grep '^r200' | head -n 1 | awk '{ print $2 }'`
-    if [ -z "${R500_VAL}" ] || [ -z "${R200_VAL}" ]; then
-        printf "## ERROR: cannot get R500 or R200\n"
-        exit 30
-    fi
-    printf "## R200 (kpc): \`${R200_VAL}'\n" | ${TOLOG}
-    printf "## R500 (kpc): \`${R500_VAL}'\n" | ${TOLOG}
-    printf "## CMD: ${LX1_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL}\n" | ${TOLOG}
-#    printf "## CMD: ${LX2_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL}\n" | ${TOLOG}
-    sh ${LX1_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL} | ${TOLOG}
-#    sh ${LX2_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL} | ${TOLOG}
-    ## append results to main log file
-    if [ ! -z "${MAIN_LOG}" ]; then
-        printf "\n" >> ${MAIN_LOG}
-        printf "`pwd -P`\n" >> ${MAIN_LOG}
-        grep '^L[25]00' ${LOGFILE} >> ${MAIN_LOG}
-    fi
-fi
-printf "\n++++++++++++++++++++++++++++++++++++++\n"
-
diff --git a/mod_ly/lx_simple_gxy_rs.sh b/mod_ly/lx_simple_gxy_rs.sh
deleted file mode 100755
index e424f4c..0000000
--- a/mod_ly/lx_simple_gxy_rs.sh
+++ /dev/null
@@ -1,104 +0,0 @@
-#!/bin/sh
-#
-unalias -a
-export LC_COLLATE=C
-# fix path for python
-export PATH="/usr/bin:$PATH"
-###########################################################
-## calc lx, based on `calc_lx', modified for gxy         ##
-##                                                       ##
-## LIweitiaNux <liweitianux@gmail.com>                   ##
-## November 3, 2012                                      ##
-###########################################################
-
-## usage, `path_conffile' is the configuration file
-## which contains the `path' to each `repro/mass' directory
-if [ $# -eq 1 ]; then
-    # process dir
-    MDIR="$1"
-elif [ $# -eq 2 ]; then
-    # process dir
-    MDIR="$1"
-    # separate log file
-    MAIN_LOG="`pwd -P`/`basename $2`"
-else
-    printf "usage:\n"
-    printf "    `basename $0` <mass_dir> [ <logfile> ]\n"
-    printf "\nNOTE:\n"
-    printf "   script cannot handle \`~' in path\n"
-    exit 1
-fi
-
-if [ ! -d "${MDIR}" ]; then
-    printf "## ERROR: given \`${MDIR}' not a directory\n"
-    exit 2
-fi
-if [ -d "${MAIN_LOG}" ]; then
-    printf "## ERROR: given \`${MAIN_LOG}' IS a file\n"
-    exit 3
-fi
-
-## set the path to the script {{{
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-LX1_SCRIPT="$base_path/luminosity_0.1-2.4_lwt_rs.sh"
-LX2_SCRIPT="$base_path/luminosity_0.5-2_lwt_rs.sh"
-if [ ! -e "${LX1_SCRIPT}" ] || [ ! -e "${LX2_SCRIPT}" ]; then
-    printf "ERROR: \`LX_SCRIPT' not exist\n"
-    exit 250
-fi
-## script path }}}
-
-# result lines
-RES_LINE=100
-
-# process
-cd ${MDIR}
-printf "Entered dir: \``pwd`'\n"
-# mass fitting conf
-MCONF="`ls fitting_mass.conf global.cfg 2> /dev/null | head -n 1`"
-if [ ! -r "${MCONF}" ]; then
-    printf "ERROR: main configuration file not accessiable\n"
-    exit 10
-else
-    printf "## use main configuration file: \`${MCONF}'\n"
-    LOGFILE="lx_gxy_`date '+%Y%m%d%H'`.log"
-    [ -e "${LOGFILE}" ] && mv -fv ${LOGFILE} ${LOGFILE}_bak
-    TOLOG="tee -a ${LOGFILE}"
-    printf "## use logfile: \`${LOGFILE}'\n"
-    if [ ! -z "${MAIN_LOG}" ]; then
-        printf "## separate main logfile: \`${MAIN_LOG}'\n"
-    fi
-    printf "## working directory: \``pwd -P`'\n" | ${TOLOG}
-    printf "## use configuration files: \`${MCONF}'\n" | ${TOLOG}
-    # fitting_mass logfile, get R500 from it
-    MLOG=`ls ${MCONF%.[confgCONFG]*}*.log | tail -n 1`
-    if [ ! -r "${MLOG}" ]; then
-        printf "## ERROR: mass log file not accessiable\n"
-        exit 20
-    fi
-    R500_VAL=`tail -n ${RES_LINE} ${MLOG} | grep '^r500' | head -n 1 | awk '{ print $2 }'`
-    R200_VAL=`tail -n ${RES_LINE} ${MLOG} | grep '^r200' | head -n 1 | awk '{ print $2 }'`
-    if [ -z "${R500_VAL}" ] || [ -z "${R200_VAL}" ]; then
-        printf "## ERROR: cannot get R500 or R200\n"
-        exit 30
-    fi
-    printf "## R200 (kpc): \`${R200_VAL}'\n" | ${TOLOG}
-    printf "## R500 (kpc): \`${R500_VAL}'\n" | ${TOLOG}
-    printf "## CMD: ${LX1_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL}\n" | ${TOLOG}
-#    printf "## CMD: ${LX2_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL}\n" | ${TOLOG}
-    sh ${LX1_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL} | ${TOLOG}
-#    sh ${LX2_SCRIPT} ${MCONF} ${R200_VAL} ${R500_VAL} | ${TOLOG}
-    ## append results to main log file
-    if [ ! -z "${MAIN_LOG}" ]; then
-        printf "\n" >> ${MAIN_LOG}
-        printf "`pwd -P`\n" >> ${MAIN_LOG}
-        grep '^L[25]00' ${LOGFILE} >> ${MAIN_LOG}
-    fi
-fi
-printf "\n++++++++++++++++++++++++++++++++++++++\n"
-
diff --git a/mod_ly/shuffle_T.py b/mod_ly/shuffle_T.py
deleted file mode 100755
index 24e7393..0000000
--- a/mod_ly/shuffle_T.py
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/usr/bin/python
-
-import sys
-import scipy
-
-output_file=open(sys.argv[2],'w')
-for i in open(sys.argv[1]):
-    r,re,c,s=i.strip().split()
-    c=float(c)
-    s=float(s)
-
-    if c>0 and s>0:
-        c1=-1
-        while c1<=0:
-            c1=scipy.random.normal(0,1)*s+c
-
-        output_file.write("%s\t%s\t%s\t%s\n"%(r,re,c1,s))
-
diff --git a/mod_ly/shuffle_sbp.py b/mod_ly/shuffle_sbp.py
deleted file mode 100755
index 210bfb8..0000000
--- a/mod_ly/shuffle_sbp.py
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/usr/bin/python
-
-import sys
-import scipy
-
-output_file=open(sys.argv[2],'w')
-for i in open(sys.argv[1]):
-    c,s=i.strip().split()
-    c=float(c)
-    s=float(s)
-
-    if c>0 and s>0:
-        c1=-1
-        while c1<=0:
-            c1=scipy.random.normal(0,1)*s+c
-
-        output_file.write("%s\t%s\n"%(c1,s))
-