Remove obsolete scripts

1 files changed, 0 insertions, 235 deletions

diff --git a/mod_ly/fit_beta_nfw_mass_profile.sh b/mod_ly/fit_beta_nfw_mass_profile.sh
deleted file mode 100755
index 8da6070..0000000
--- a/mod_ly/fit_beta_nfw_mass_profile.sh
+++ /dev/null
@@ -1,235 +0,0 @@
-#!/bin/sh
-
-# modified by LIweitaNux, 2012/09/06
-export PATH="/usr/local/bin:/usr/bin:/bin:$PATH"
-
-if [ $# -eq 1 ]; then
-    cfg_file="$1"
-elif [ $# -eq 2 ]; then
-    cfg_file="$1"
-    CENTER_VAL="YES"
-else
-    echo "Usage: $0 <cfg_file> [c]"
-    exit 1
-fi
-
-if ! which xspec > /dev/null; then
-    printf "ERROR: please initialize HEASOFT first\n"
-    exit 2
-fi
-
-if [ -z "${HEADAS}" ]; then
-    printf "ERROR: variable \`HEADAS' not properly set\n"
-    exit 3
-fi
-
-export PGPLOT_FONT="${HEADAS}/lib/grfont.dat"
-printf "## PGPLOT_FONT: \`${PGPLOT_FONT}'\n"
-
-if [ "$0" = `basename $0` ]; then
-    script_path=`which $0`
-    base_path=`dirname ${script_path}`
-else
-    base_path=`dirname $0`
-fi
-printf "## base_path: \`${base_path}'\n"
-printf "## use configuration file: \`${cfg_file}'\n"
-
-#initialize profile type name
-t_profile_type=`grep '^t_profile' $cfg_file | awk '{print $2}'`
-printf "## t_profile_type: \`$t_profile_type'\n"
-#initialize data file name
-t_data_file=`grep '^t_data_file' $cfg_file | awk '{print $2}'`
-t_param_file=`grep '^t_param_file' $cfg_file | awk '{print $2}'`
-#initialize sbp config file
-sbp_cfg=`grep '^sbp_cfg' $cfg_file | awk '{print $2}'`
-#initialize the temperature profile file
-T_file=`grep '^T_file' $sbp_cfg | awk '{print $2}'`
-cfunc_file=`grep '^cfunc_file' ${sbp_cfg} |awk '{print $2}'`
-abund=`grep '^abund' ${cfg_file} |awk '{print $2}'`
-nh=`grep '^nh' ${cfg_file} |awk '{print $2}'`
-## calc `cm_per_pixel' instead {{{
-# cm_per_pixel=`grep '^cm_per_pixel' $sbp_cfg|awk '{print $2}'`
-z=`grep '^z' $sbp_cfg | awk '{ print $2 }'`
-cm_per_pixel=`${base_path}/calc_distance ${z} | grep 'cm_per_pixel' | awk '{ print $2 }'`
-sed -i'' "s/^cm_per_pixel.*$/cm_per_pixel    ${cm_per_pixel}/" ${sbp_cfg}
-printf "## redshift: ${z}, cm_per_pixel: ${cm_per_pixel}\n"
-## cm_per_pixel }}}
-da=`python -c "print($cm_per_pixel/(.492/3600/180*3.1415926))"`
-dl=`python -c "print($da*(1+$z)**2)"`
-printf "da= ${da}\n"
-printf "dl= ${dl}\n"
-## sbp {{{
-sbp_data_file=`grep '^sbp_file' $sbp_cfg | awk '{print $2}'`
-radius_sbp_file=`grep '^radius_sbp_file' ${cfg_file} | awk '{print $2}'`
-
-if [ "x$radius_sbp_file" = "x" ]; then
-    echo "ERROR, must have radius_sbp_file assigned, this file should be a 4-column file, which contains the radius, radius err, sbp, and sbp err"
-    exit 200
-fi
-
-TMP_RSBP="_tmp_rsbp.txt"
-[ -e "${TMP_RSBP}" ] && rm -f ${TMP_RSBP}
-cat ${radius_sbp_file} | sed 's/#.*$//' | grep -Ev '^\s*$' > ${TMP_RSBP}
-# mv -f _tmp_rsbp.txt ${radius_sbp_file}
-radius_sbp_file="${TMP_RSBP}"
-## sbp }}}
-
-# determine which temperature profile to be used, and fit the T profile {{{
-if [ "$t_profile_type" = "zyy" ]; then
-    $base_path/fit_zyy_model $t_data_file $t_param_file $cm_per_pixel
-    # mv -f zyy_dump.qdp ${T_file}
-    mv -f zyy_dump.qdp zyy_dump_center.qdp
-elif [ "$t_profile_type" = "m0603246" ]; then
-    $base_path/fit_m0603246 $t_data_file $cm_per_pixel
-    # mv -f m0603246_dump.qdp ${T_file}
-    mv -f m0603246_dump.qdp m0603246_dump_center.qdp
-elif [ "$t_profile_type" = "wang2012" ]; then
-    $base_path/fit_wang2012_model $t_data_file $t_param_file $cm_per_pixel 2> /dev/null | tee wang2012_center_param.txt
-    # mv -f wang2012_dump.qdp ${T_file}
-    cp -fv wang2012_dump.qdp ${T_file}
-    T_file_center="wang2012_dump_center.qdp"
-    mv -fv wang2012_dump.qdp ${T_file_center}
-    mv -fv fit_result.qdp wang2012_fit_center.qdp
-elif [ "$t_profile_type" = "allen" ]; then
-    $base_path/fit_allen_model $t_data_file $cm_per_pixel
-    # mv -f allen_dump.qdp ${T_file}
-    mv -f allen_dump.qdp allen_dump_center.qdp
-elif [ "$t_profile_type" = "zzl" ]; then
-    $base_path/fit_zzl_model $t_data_file $t_param_file
-    # mv -f zzl_dump.qdp ${T_file}
-    mv -f zzl_dump.qdp zzl_dump_center.qdp
-else
-    printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-    exit 10
-fi
-# temp profile }}}
-
-$base_path/coolfunc_calc_bolo.sh ${T_file_center} $abund $nh $z cfunc_bolo.dat
-$base_path/coolfunc_calc.sh ${T_file_center} $abund $nh $z $cfunc_file
-mv -fv flux_cnt_ratio.txt flux_cnt_ratio_center.txt
-# fit sbp
-$base_path/fit_beta_sbp $sbp_cfg 2> /dev/null
-mv -fv beta_param.txt beta_param_center.txt
-cat beta_param_center.txt
-mv -fv sbp_fit.qdp sbp_fit_center.qdp
-mv -fv rho_fit.qdp rho_fit_center.qdp
-mv -fv rho_fit.dat rho_fit_center.dat
-$base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-mv -fv nfw_param.txt nfw_param_center.txt
-mv -fv nfw_fit_result.qdp nfw_fit_center.qdp
-mv -fv nfw_dump.qdp mass_int_center.qdp
-mv -fv overdensity.qdp overdensity_center.qdp
-mv -fv gas_mass_int.qdp gas_mass_int_center.qdp
-
-#exit 233
-
-## cooling time
-$base_path/cooling_time rho_fit_center.dat ${T_file_center} cfunc_bolo.dat $dl $cm_per_pixel > cooling_time.dat
-## radius to calculate tcool, not the cooling time!
-rcool=`$base_path/analyze_mass_profile.py 500 c | grep '^r500' | awk -F "=" '{print .048*$2}'`
-printf "rcool= ${rcool}\n"
-
-## center value {{{
-if [ "${CENTER_VAL}" = "YES" ]; then
-    $base_path/analyze_mass_profile.py 200 c
-    $base_path/analyze_mass_profile.py 500 c
-    $base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-    exit 0
-fi
-## center value }}}
-
-# clean previous files
-rm -f summary_shuffle_mass_profile.qdp
-rm -f summary_overdensity.qdp
-rm -f summary_mass_profile.qdp
-rm -f summary_gas_mass_profile.qdp
-
-## count
-COUNT=1
-
-#100 times of Monte-carlo simulation to determine error
-#just repeat above steps
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-for i in `seq 1 100`; do
-    # echo $t_data_file
-    $base_path/shuffle_T.py $t_data_file temp_shuffled_t.dat
-    $base_path/shuffle_sbp.py $sbp_data_file temp_shuffled_sbp.dat
-    # t_data_file=temp_shuffled_t.dat
-#exit
-
-    if [ "$t_profile_type" = "zyy" ]; then
-	$base_path/fit_zyy_model temp_shuffled_t.dat $t_param_file $cm_per_pixel
-	mv -f zyy_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "m0603246" ]; then
-	$base_path/fit_m0603246 temp_shuffled_t.dat $cm_per_pixel
-	mv -f m0603246_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "wang2012" ]; then
-	$base_path/fit_wang2012_model temp_shuffled_t.dat $t_param_file $cm_per_pixel 2> /dev/null
-        mv -f wang2012_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "allen" ]; then
-	$base_path/fit_allen_model temp_shuffled_t.dat $cm_per_pixel
-	mv -f allen_dump.qdp ${T_file}
-    elif [ "$t_profile_type" = "zzl" ]; then
-        $base_path/fit_zzl_model temp_shuffled_t.dat $t_param_file
-        mv -f zzl_dump.qdp ${T_file}
-    else
-        printf "ERROR: temperature profile name \`${t_profile_type}' invalid!\n"
-        exit 10
-    fi
-
-#exit
-    : > temp_sbp.cfg
-    
-    cat $sbp_cfg | while read l; do
-        if echo $l | grep -q 'sbp_file'; then
-            echo "sbp_file temp_shuffled_sbp.dat" >> temp_sbp.cfg
-        elif echo $l | grep -q 'T_file'; then
-            echo "T_file ${T_file}" >> temp_sbp.cfg
-        else
-            echo $l >> temp_sbp.cfg
-        fi
-    done
-
-    ## count
-    printf "## ${COUNT} ##\n"
-    COUNT=`expr ${COUNT} + 1`
-    printf "## `pwd` ##\n"
-    $base_path/coolfunc_calc.sh ${T_file} ${abund} ${nh} ${z} ${cfunc_file}
-
-    # single-beta model
-    $base_path/fit_beta_sbp temp_sbp.cfg 2> /dev/null
-    [ -r "beta_param.txt" ] && cat beta_param.txt
-    $base_path/fit_nfw_mass mass_int.dat $z 2> /dev/null
-    cat nfw_dump.qdp >> summary_mass_profile.qdp
-    echo "no no no" >> summary_mass_profile.qdp
-
-    cat overdensity.qdp >> summary_overdensity.qdp
-    echo "no no no" >> summary_overdensity.qdp
-
-    cat gas_mass_int.qdp >> summary_gas_mass_profile.qdp
-    echo "no no no" >> summary_gas_mass_profile.qdp
-
-done        # end `while'
-printf "\n+++++++++++++++++++ Monte Carlo +++++++++++++++++++++\n"
-
-#analys the errors
-printf "\n+++++++++++++++ RESULTS (single-beta) +++++++++++++++\n"
-RESULT="results_mrl.txt"
-[ -e "${RESULT}" ] && mv -fv ${RESULT} ${RESULT}_bak
-
-$base_path/analyze_mass_profile.py 200 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 1500 | tee -a ${RESULT}
-$base_path/analyze_mass_profile.py 2500 | tee -a ${RESULT}
-
-R200_VAL=`grep '^r200' ${RESULT} | awk '{ print $2 }'`
-R500_VAL=`grep '^r500' ${RESULT} | awk '{ print $2 }'`
-printf "\n## R200: ${R200_VAL}, R500: ${R500_VAL}\n"
-L200=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R200_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-L500=`$base_path/calc_lx $radius_sbp_file flux_cnt_ratio_center.txt $z ${R500_VAL} $t_data_file | grep '^Lx' | awk '{ print $2,$3,$4 }'`
-printf "L200= ${L200} erg/s\n" | tee -a ${RESULT}
-printf "L500= ${L500} erg/s\n" | tee -a ${RESULT}
-$base_path/extract_tcool.py $rcool | tee cooling_time_result.txt
-printf "\n+++++++++++++++++++++++++++++++++++++++++++++++++++++\n"
-